Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 3.0e-116 421.8 204 100.0
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 6.4e-106 387.5 204 90.2
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 5.6e-102 374.4 204 86.8
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 5.6e-102 374.4 204 86.8
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 1.4e-100 369.8 202 88.6
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 2.3e-100 369.0 204 86.3
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 6.8e-100 367.5 204 86.3
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.5e-99 366.3 204 84.8
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 9.8e-99 363.6 208 82.7
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 3.7e-98 361.7 204 83.8
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.1e-97 360.1 216 83.3
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 1.1e-97 360.1 204 83.3
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 1.1e-97 360.1 204 85.3
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 1.9e-97 359.4 204 83.8
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.4e-97 359.0 204 82.8
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 4.1e-97 358.2 204 81.9
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 7.0e-97 357.5 209 80.9
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 2.0e-96 355.9 204 83.3
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 2.0e-96 355.9 205 84.9
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 4.6e-96 354.8 205 81.5
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 6.0e-96 354.4 206 82.0
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 6.0e-96 354.4 204 84.8
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 7.8e-96 354.0 204 82.4
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 1.0e-95 353.6 207 82.6
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 1.3e-95 353.2 204 82.4
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 2.3e-95 352.4 204 82.8
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 3.0e-95 352.1 209 79.9
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 3.9e-95 351.7 204 81.9
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 8.6e-95 350.5 203 82.3
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 8.6e-95 350.5 207 81.6
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 1.1e-94 350.1 204 82.4
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 1.1e-94 350.1 205 83.4
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.1e-94 350.1 204 82.4
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 1.1e-94 350.1 204 82.4
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.5e-94 349.7 204 81.4
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.9e-94 349.4 204 80.9
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 2.5e-94 349.0 203 79.3
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.3e-94 348.2 201 82.1
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 4.3e-94 348.2 202 81.7
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 7.3e-94 347.4 204 81.9
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 9.5e-94 347.1 203 79.8
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 1.6e-93 346.3 207 79.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 1.6e-93 346.3 207 80.2
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.6e-93 346.3 207 78.7
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 2.1e-93 345.9 203 81.8
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 2.8e-93 345.5 207 79.7
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 3.6e-93 345.1 204 80.4
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 6.2e-93 344.4 198 82.3
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 6.2e-93 344.4 198 82.3
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 6.2e-93 344.4 197 84.8
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 6.2e-93 344.4 206 81.6
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 8.1e-93 344.0 200 80.5
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 1.1e-92 343.6 198 83.3
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 1.1e-92 343.6 202 81.7
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 1.4e-92 343.2 202 81.7
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 2.3e-92 342.4 200 80.5
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 3.1e-92 342.0 198 82.3
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 4.0e-92 341.7 200 80.5
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 6.8e-92 340.9 202 80.7
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 1.2e-91 340.1 207 78.3
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 2.0e-91 339.3 209 78.0
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 2.0e-91 339.3 200 82.0
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 2.6e-91 339.0 204 81.9
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 3.4e-91 338.6 205 81.0
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 3.4e-91 338.6 202 78.2
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 4.4e-91 338.2 206 77.7
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 4.4e-91 338.2 197 83.8
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 5.8e-91 337.8 198 81.3
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 9.8e-91 337.0 205 78.0
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 9.8e-91 337.0 197 83.2
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 2.2e-90 335.9 208 77.4
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 3.7e-90 335.1 204 79.9
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 4.9e-90 334.7 203 77.8
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 4.9e-90 334.7 204 79.4
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 6.4e-90 334.3 202 79.7
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 8.3e-90 334.0 206 77.7
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 1.4e-89 333.2 208 76.4
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 1.4e-89 333.2 207 76.8
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 3.2e-89 332.0 197 82.7
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 5.4e-89 331.3 200 78.5
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 7.1e-89 330.9 198 80.3
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 7.1e-89 330.9 201 79.6
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.6e-88 329.7 204 78.4
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 1.6e-88 329.7 228 71.1
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 2.7e-88 328.9 199 79.9
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 3.5e-88 328.6 193 79.8
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 4.6e-88 328.2 198 79.3
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 6.0e-88 327.8 204 78.9
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.3e-87 326.6 200 79.5
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 6.6e-87 324.3 200 78.5
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 5.6e-86 321.2 200 79.0
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 1.2e-85 320.1 202 77.7
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 1.2e-85 320.1 202 77.7
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 1.2e-85 320.1 204 76.0
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 1.6e-85 319.7 204 76.0
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.3e-82 310.1 200 77.0
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 6.4e-82 307.8 200 76.0
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 5.4e-81 304.7 200 75.5
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 7.8e-80 300.8 183 78.7
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 2.8e-77 292.4 171 81.9
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 3.6e-77 292.0 203 72.4
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 3.2e-73 278.9 197 66.5
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 1.2e-72 276.9 201 67.2
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 3.5e-72 275.4 166 79.5
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 4.6e-72 275.0 198 67.7
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 1.1e-68 263.8 167 76.6
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 1.7e-66 256.5 200 61.5
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 2.9e-66 255.8 149 82.6
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.9e-65 253.1 205 64.9
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.9e-65 253.1 205 64.9
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 3.5e-64 248.8 205 57.1
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 1.5e-62 243.4 202 57.9
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 4.3e-62 241.9 202 59.9
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 4.3e-62 241.9 161 71.4
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 3.1e-60 235.7 133 87.2
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.0e-59 233.0 195 61.5
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 3.5e-56 222.2 145 75.9
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 3.2e-49 199.1 124 73.4
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 1.8e-47 193.4 119 77.3
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 2.3e-47 193.0 119 77.3
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 6.7e-47 191.4 145 69.0
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 8.7e-47 191.0 145 69.7
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 7.4e-46 188.0 167 61.7
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.3e-42 177.2 97 81.4
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 8.7e-39 164.5 160 51.9
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 8.5e-34 147.9 100 74.0
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 1.4e-31 140.6 199 42.2
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.1e-28 129.4 100 64.0
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 9.1e-28 127.9 203 41.9
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 5.5e-25 118.6 75 74.7
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 2.1e-24 116.7 75 70.7
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 2.8e-21 106.3 62 75.8
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.1e-20 104.4 75 68.0
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 3.1e-12 76.3 37 91.9
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 2.1e-08 63.5 37 81.1
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 1.4e-07 60.8 41 68.3
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 2.3e-07 60.1 39 76.9
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 4.0e-07 59.3 36 77.8


User provided reference genes

Program Settings