Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p046635 Quercus lobata HOM05D003083 ORTHO05D003466 3.1e-33 144.4 67 100.0
BraA06t24152Z Brassica rapa HOM05D003083 ORTHO05D003466 4.2e-22 107.5 91 59.3
Lj4A854T13 Lonicera japonica HOM05D003083 ORTHO05D003466 7.1e-22 106.7 78 64.1
Rhsim11G0182800 Rhododendron simsii HOM05D003083 ORTHO05D003466 1.6e-21 105.5 70 71.4
Aa31LG2G6730 Aethionema arabicum HOM05D003083 ORTHO05D003466 7.9e-21 103.2 48 97.9
Thhalv10004378m.g Eutrema salsugineum HOM05D003083 ORTHO05D003466 1.3e-20 102.4 46 100.0
AL1G25300 Arabidopsis lyrata HOM05D003083 ORTHO05D003466 1.8e-20 102.1 46 97.8
AT1G13560 Arabidopsis thaliana HOM05D003083 ORTHO05D003466 1.8e-20 102.1 46 97.8
BcaB02g06450 Brassica carinata HOM05D003083 ORTHO05D003466 1.8e-20 102.1 46 97.8
BcaC05g25248 Brassica carinata HOM05D003083 ORTHO05D003466 1.8e-20 102.1 46 97.8
A06p09620 Brassica napus HOM05D003083 ORTHO05D003466 1.8e-20 102.1 46 97.8
C05p11330 Brassica napus HOM05D003083 ORTHO05D003466 1.8e-20 102.1 46 97.8
BolC5t29882H Brassica oleracea HOM05D003083 ORTHO05D003466 1.8e-20 102.1 46 97.8
Carub.0001s1324 Capsella rubella HOM05D003083 ORTHO05D003466 1.8e-20 102.1 46 97.8
CARHR013880 Cardamine hirsuta HOM05D003083 ORTHO05D003466 1.8e-20 102.1 46 97.8
Sp1g11950 Schrenkiella parvula HOM05D003083 ORTHO05D003466 1.8e-20 102.1 46 97.8
Sp2g14850 Schrenkiella parvula HOM05D003083 ORTHO05D003466 1.8e-20 102.1 46 97.8
Thhalv10007875m.g Eutrema salsugineum HOM05D003083 ORTHO05D003466 2.3e-20 101.7 46 95.7
BcaC06g31132 Brassica carinata HOM05D003083 ORTHO05D003466 6.7e-20 100.1 57 82.5
A02p33890 Brassica napus HOM05D003083 ORTHO05D003466 6.7e-20 100.1 46 95.7
BraA02t08407Z Brassica rapa HOM05D003083 ORTHO05D003466 6.7e-20 100.1 46 95.7
Nitab4.5_0008828g0020 Nicotiana tabacum HOM05D003083 ORTHO05D003466 1.1e-19 99.4 52 84.6
Oeu024129.1 Olea europaea HOM05D003083 ORTHO05D003466 1.5e-19 99.0 46 95.7
THA.LOC104805232 Tarenaya hassleriana HOM05D003083 ORTHO05D003466 1.5e-19 99.0 46 95.7
arahy.Tifrunner.gnm1.ann1.REV2BJ Arachis hypogaea HOM05D003083 ORTHO05D003466 1.9e-19 98.6 46 93.5
arahy.Tifrunner.gnm1.ann1.UA9SQ6 Arachis hypogaea HOM05D003083 ORTHO05D003466 1.9e-19 98.6 46 93.5
BcaB07g30267 Brassica carinata HOM05D003083 ORTHO05D003466 1.9e-19 98.6 46 95.7
BcaC06g33978 Brassica carinata HOM05D003083 ORTHO05D003466 1.9e-19 98.6 46 95.7
A06p42730 Brassica napus HOM05D003083 ORTHO05D003466 1.9e-19 98.6 46 95.7
C07p34400 Brassica napus HOM05D003083 ORTHO05D003466 1.9e-19 98.6 46 95.7
BolC7t43968H Brassica oleracea HOM05D003083 ORTHO05D003466 1.9e-19 98.6 46 95.7
BraA06t27186Z Brassica rapa HOM05D003083 ORTHO05D003466 1.9e-19 98.6 46 95.7
CAN.G184.35 Capsicum annuum HOM05D003083 ORTHO05D003466 2.5e-19 98.2 65 72.3
ECA232G3768 Erigeron canadensis HOM05D003083 ORTHO05D003466 2.5e-19 98.2 61 70.5
Prupe.7G262100 Prunus persica HOM05D003083 ORTHO05D003466 3.3e-19 97.8 46 93.5
Dinv27411 Davidia involucrata HOM05D003083 ORTHO05D003466 4.3e-19 97.4 46 93.5
Eucgr.G02395 Eucalyptus grandis HOM05D003083 ORTHO05D003466 4.3e-19 97.4 46 93.5
THA.LOC104825723 Tarenaya hassleriana HOM05D003083 ORTHO05D003466 4.3e-19 97.4 46 93.5
Thecc.02G315000 Theobroma cacao HOM05D003083 ORTHO05D003466 4.3e-19 97.4 46 93.5
Aa31LG1G1360 Aethionema arabicum HOM05D003083 ORTHO05D003466 5.6e-19 97.1 46 93.5
BcaB08g34312 Brassica carinata HOM05D003083 ORTHO05D003466 5.6e-19 97.1 46 93.5
Lalb_Chr04g0255241 Lupinus albus HOM05D003083 ORTHO05D003466 5.6e-19 97.1 46 93.5
Gohir.A13G092200 Gossypium hirsutum HOM05D003083 ORTHO05D003466 7.4e-19 96.7 46 91.3
Gorai.013G102300 Gossypium raimondii HOM05D003083 ORTHO05D003466 7.4e-19 96.7 46 91.3
Phvul.001G209800 Phaseolus vulgaris HOM05D003083 ORTHO05D003466 7.4e-19 96.7 46 91.3
Phvul.003G044000 Phaseolus vulgaris HOM05D003083 ORTHO05D003466 7.4e-19 96.7 46 91.3
Atru.chr11.1449 Acer truncatum HOM05D003083 ORTHO05D003466 9.6e-19 96.3 46 89.1
Atru.chr11.1479 Acer truncatum HOM05D003083 ORTHO05D003466 9.6e-19 96.3 46 89.1
CiPaw.05G118500 Carya illinoinensis HOM05D003083 ORTHO05D003466 9.6e-19 96.3 55 78.2
Glyma.02G128300 Glycine max HOM05D003083 ORTHO05D003466 9.6e-19 96.3 46 91.3
QL11p007130 Quercus lobata HOM05D003083 ORTHO05D003466 9.6e-19 96.3 51 82.4
Sc04g0007060 Simmondsia chinensis HOM05D003083 ORTHO05D003466 9.6e-19 96.3 46 93.5
Ah.02g126680 Amaranthus hybridus HOM05D003083 ORTHO05D003466 1.3e-18 95.9 46 89.1
MSTRG.2280 Avicennia marina HOM05D003083 ORTHO05D003466 1.3e-18 95.9 46 93.5
Lsat_1_v5_gn_2_104520 Lactuca sativa HOM05D003083 ORTHO05D003466 1.3e-18 95.9 48 85.4
Psat1g085000 Pisum sativum HOM05D003083 ORTHO05D003466 1.3e-18 95.9 46 89.1
PGR119G0526 Punica granatum HOM05D003083 ORTHO05D003466 1.3e-18 95.9 46 91.3
Migut.E00270 Erythranthe guttata HOM05D003083 ORTHO05D003466 1.6e-18 95.5 46 93.5
MD16G1057500 Malus domestica HOM05D003083 ORTHO05D003466 1.6e-18 95.5 46 91.3
THA.LOC104824047 Tarenaya hassleriana HOM05D003083 ORTHO05D003466 1.6e-18 95.5 46 91.3
BcaC07g41635 Brassica carinata HOM05D003083 ORTHO05D003466 2.1e-18 95.1 46 89.1
A09p62930 Brassica napus HOM05D003083 ORTHO05D003466 2.1e-18 95.1 46 89.1
C08p46370 Brassica napus HOM05D003083 ORTHO05D003466 2.1e-18 95.1 46 89.1
BolC8t52186H Brassica oleracea HOM05D003083 ORTHO05D003466 2.1e-18 95.1 46 89.1
BraA09t41651Z Brassica rapa HOM05D003083 ORTHO05D003466 2.1e-18 95.1 46 89.1
CiPaw.06G097300 Carya illinoinensis HOM05D003083 ORTHO05D003466 2.1e-18 95.1 46 89.1
Manes.14G094200 Manihot esculenta HOM05D003083 ORTHO05D003466 2.1e-18 95.1 46 89.1
Actinidia11768 Actinidia chinensis HOM05D003083 ORTHO05D003466 2.8e-18 94.7 53 81.1
CsaV3_5G024400 Cucumis sativus L. HOM05D003083 ORTHO05D003466 2.8e-18 94.7 46 89.1
Glyma.12G081900 Glycine max HOM05D003083 ORTHO05D003466 2.8e-18 94.7 46 89.1
Aqoxy4G02735 Aquilegia oxysepala HOM05D003083 ORTHO05D003466 3.6e-18 94.4 46 87.0
Dinv16559 Davidia involucrata HOM05D003083 ORTHO05D003466 3.6e-18 94.4 46 91.3
Duzib248G0341 Durio zibethinus HOM05D003083 ORTHO05D003466 3.6e-18 94.4 46 91.3
Sed0015771 Sechium edule HOM05D003083 ORTHO05D003466 3.6e-18 94.4 46 87.0
AL5G14090 Arabidopsis lyrata HOM05D003083 ORTHO05D003466 4.8e-18 94.0 46 91.3
Carub.0005s0335 Capsella rubella HOM05D003083 ORTHO05D003466 4.8e-18 94.0 46 91.3
CARHR146560 Cardamine hirsuta HOM05D003083 ORTHO05D003466 4.8e-18 94.0 46 91.3
Lj2P592T23 Lonicera japonica HOM05D003083 ORTHO05D003466 4.8e-18 94.0 50 82.0
Lalb_Chr17g0341721 Lupinus albus HOM05D003083 ORTHO05D003466 4.8e-18 94.0 46 87.0
MD12G1007000 Malus domestica HOM05D003083 ORTHO05D003466 4.8e-18 94.0 46 89.1
ECA238G1707 Erigeron canadensis HOM05D003083 ORTHO05D003466 6.2e-18 93.6 46 87.0
Lalb_Chr08g0245781 Lupinus albus HOM05D003083 ORTHO05D003466 6.2e-18 93.6 46 89.1
Manes.06G076700 Manihot esculenta HOM05D003083 ORTHO05D003466 6.2e-18 93.6 46 87.0
CsaV3_1G013550 Cucumis sativus L. HOM05D003083 ORTHO05D003466 8.1e-18 93.2 46 87.0
HanXRQChr11g0342141 Helianthus annuus HOM05D003083 ORTHO05D003466 8.1e-18 93.2 46 84.8
TAR622G0202 Trochodendron aralioides HOM05D003083 ORTHO05D003466 8.1e-18 93.2 50 76.0
arahy.Tifrunner.gnm1.ann1.FB1FM8 Arachis hypogaea HOM05D003083 ORTHO05D003466 1.1e-17 92.8 48 87.5
BcaC03g17272 Brassica carinata HOM05D003083 ORTHO05D003466 1.1e-17 92.8 46 89.1
C02p52160 Brassica napus HOM05D003083 ORTHO05D003466 1.1e-17 92.8 46 89.1
BolC2t11301H Brassica oleracea HOM05D003083 ORTHO05D003466 1.1e-17 92.8 46 89.1
COL.COLO4_34869 Corchorus olitorius HOM05D003083 ORTHO05D003466 1.1e-17 92.8 51 82.4
Lj4g0001140 Lotus japonicus HOM05D003083 ORTHO05D003466 1.1e-17 92.8 46 84.8
SGA_v2.0_scaffold14G06783 Striga asiatica HOM05D003083 ORTHO05D003466 1.1e-17 92.8 46 87.0
TWI31G0301 Tripterygium wilfordii HOM05D003083 ORTHO05D003466 1.1e-17 92.8 46 87.0
vmacro02058 Vaccinium macrocarpon HOM05D003083 ORTHO05D003466 1.1e-17 92.8 46 87.0
AagrBONN_evm.TU.Sc2ySwM_368.1877 Anthoceros agrestis HOM05D003083 ORTHO05D003466 1.4e-17 92.4 46 87.0
CSS0020278 Camellia sinensis var. sinensis HOM05D003083 ORTHO05D003466 1.4e-17 92.4 46 89.1
CSS0033249 Camellia sinensis var. sinensis HOM05D003083 ORTHO05D003466 1.4e-17 92.4 46 89.1
DCAR_026697 Daucus carota HOM05D003083 ORTHO05D003466 1.4e-17 92.4 46 89.1
Peaxi162Scf00402g00512 Petunia axillaris HOM05D003083 ORTHO05D003466 1.4e-17 92.4 51 80.4
arahy.Tifrunner.gnm1.ann1.MMN7ZE Arachis hypogaea HOM05D003083 ORTHO05D003466 1.8e-17 92.0 46 89.1
Ciclev10031785m.g Citrus clementina HOM05D003083 ORTHO05D003466 2.4e-17 91.7 46 89.1
HanXRQChr11g0321311 Helianthus annuus HOM05D003083 ORTHO05D003466 2.4e-17 91.7 46 84.8
Oeu054562.1 Olea europaea HOM05D003083 ORTHO05D003466 2.4e-17 91.7 47 87.2
Potri.010G133800 Populus trichocarpa HOM05D003083 ORTHO05D003466 2.4e-17 91.7 46 84.8
vmacro01278 Vaccinium macrocarpon HOM05D003083 ORTHO05D003466 2.4e-17 91.7 46 84.8
Ca_14133_v3 Cicer arietinum L. HOM05D003083 ORTHO05D003466 3.1e-17 91.3 51 82.4
Gohir.D05G307500 Gossypium hirsutum HOM05D003083 ORTHO05D003466 3.1e-17 91.3 46 84.8
Gorai.009G327500 Gossypium raimondii HOM05D003083 ORTHO05D003466 3.1e-17 91.3 46 84.8
Solyc05g010440.2 Solanum lycopersicum HOM05D003083 ORTHO05D003466 3.1e-17 91.3 46 87.0
PGSC0003DMG400007515 Solanum tuberosum HOM05D003083 ORTHO05D003466 3.1e-17 91.3 46 87.0
Migut.L01127 Erythranthe guttata HOM05D003083 ORTHO05D003466 4.0e-17 90.9 46 89.1
Gohir.A04G144900 Gossypium hirsutum HOM05D003083 ORTHO05D003466 4.0e-17 90.9 46 87.0
Gorai.012G184700 Gossypium raimondii HOM05D003083 ORTHO05D003466 4.0e-17 90.9 46 87.0
TWI79G0908 Tripterygium wilfordii HOM05D003083 ORTHO05D003466 4.0e-17 90.9 46 84.8
CsaV3_5G033710 Cucumis sativus L. HOM05D003083 ORTHO05D003466 5.3e-17 90.5 46 84.8
Lj2g0013424 Lotus japonicus HOM05D003083 ORTHO05D003466 5.3e-17 90.5 46 82.6
Nn4g23623 Nelumbo nucifera HOM05D003083 ORTHO05D003466 5.3e-17 90.5 46 82.6
Potri.008G109833 Populus trichocarpa HOM05D003083 ORTHO05D003466 5.3e-17 90.5 46 82.6
Potri.T031036 Populus trichocarpa HOM05D003083 ORTHO05D003466 5.3e-17 90.5 46 82.6
CDE01G0472 Ceratophyllum demersum HOM05D003083 ORTHO05D003466 6.9e-17 90.1 46 82.6
CDE12G0871 Ceratophyllum demersum HOM05D003083 ORTHO05D003466 6.9e-17 90.1 46 82.6
Ah.04g158170 Amaranthus hybridus HOM05D003083 ORTHO05D003466 1.2e-16 89.4 46 84.8
RcHm_v2.0_Chr4g0436691 Rosa chinensis HOM05D003083 ORTHO05D003466 1.2e-16 89.4 46 84.8
Aqoxy3G00624 Aquilegia oxysepala HOM05D003083 ORTHO05D003466 1.5e-16 89.0 46 82.6
Cpa.g.sc1.262 Carica papaya HOM05D003083 ORTHO05D003466 1.5e-16 89.0 46 87.0
Gohir.D04G189400 Gossypium hirsutum HOM05D003083 ORTHO05D003466 1.5e-16 89.0 46 84.8
unitig_62.g23706 Utricularia gibba HOM05D003083 ORTHO05D003466 1.5e-16 89.0 46 84.8
FAN07G2348 Fragaria x ananassa HOM05D003083 ORTHO05D003466 2.6e-16 88.2 46 82.6
GSVIVG01010154001 Vitis vinifera HOM05D003083 ORTHO05D003466 3.4e-16 87.8 46 82.6
Sed0009989 Sechium edule HOM05D003083 ORTHO05D003466 4.5e-16 87.4 46 80.4
Medtr3g009730 Medicago truncatula HOM05D003083 ORTHO05D003466 5.8e-16 87.0 44 86.4
TAR374G1204 Trochodendron aralioides HOM05D003083 ORTHO05D003466 5.8e-16 87.0 53 73.6
CSS0044755 Camellia sinensis var. sinensis HOM05D003083 ORTHO05D003466 9.9e-16 86.3 46 82.6
CANSAT64G1145 Cannabis sativa HOM05D003083 ORTHO05D003466 1.3e-15 85.9 46 82.6
Sed0026832 Sechium edule HOM05D003083 ORTHO05D003466 1.3e-15 85.9 46 82.6
SEGI_32048 Sequoiadendron giganteum HOM05D003083 ORTHO05D003466 1.7e-15 85.5 46 80.4
Zm00001eb230240 Zea mays HOM05D003083 ORTHO05D003466 1.7e-15 85.5 46 80.4
Duzib268G0194 Durio zibethinus HOM05D003083 ORTHO05D003466 2.2e-15 85.1 46 82.6
SalBow8G2955 Salvia bowleyana HOM05D003083 ORTHO05D003466 2.2e-15 85.1 48 77.1
Os02g0119800 Oryza sativa ssp. japonica HOM05D003083 ORTHO05D003466 2.9e-15 84.7 46 76.1
BolC1t01144H Brassica oleracea HOM05D003083 ORTHO05D003466 4.9e-15 84.0 67 61.2
SMO367G0966 Selaginella moellendorffii HOM05D003083 ORTHO05D003466 4.9e-15 84.0 51 74.5
SalBow8G2854 Salvia bowleyana HOM05D003083 ORTHO05D003466 8.4e-15 83.2 46 78.3
PGR102G0378 Punica granatum HOM05D003083 ORTHO05D003466 1.1e-14 82.8 46 80.4
EL10Ac2g03699 Beta vulgaris HOM05D003083 ORTHO05D003466 1.9e-14 82.0 40 87.5
Mapoly0173s0008 Marchantia polymorpha HOM05D003083 ORTHO05D003466 4.2e-14 80.9 46 78.3
Os06g0204400 Oryza sativa ssp. japonica HOM05D003083 ORTHO05D003466 7.1e-14 80.1 46 76.1
PSO013G0209 Papaver somniferum HOM05D003083 ORTHO05D003466 9.3e-14 79.7 46 73.9
PSO832G2172 Papaver somniferum HOM05D003083 ORTHO05D003466 9.3e-14 79.7 46 73.9
Nitab4.5_0000259g0240 Nicotiana tabacum HOM05D003083 ORTHO05D003466 1.0e-12 76.3 38 86.8
Zm00001eb278650 Zea mays HOM05D003083 ORTHO05D003466 1.8e-12 75.5 46 71.7
SGA_v2.0_scaffold36G14504 Striga asiatica HOM05D003083 ORTHO05D003466 3.0e-12 74.7 36 91.7
Hund25153 Selenicereus undatus HOM05D003083 ORTHO05D003466 6.7e-12 73.6 40 77.5
ATR0580G393 Amborella trichopoda HOM05D003083 ORTHO05D003466 8.7e-12 73.2 49 65.3
SHI34639 Sapria himalayana HOM05D003083 ORTHO05D003466 8.7e-12 73.2 60 56.7
MD17G1115200 Malus domestica HOM05D003083 ORTHO05D003466 3.3e-11 71.2 34 88.2
CBR_g28542 Chara braunii HOM05D003083 ORTHO05D003466 7.4e-11 70.1 53 54.7
Cfa024311 Carpinus fangiana HOM05D003083 ORTHO05D003466 2.6e-08 61.6 53 58.5
VMungo1127G0992 Vigna mungo HOM05D003083 ORTHO05D003466 5.8e-08 60.5 29 86.2
MBI16_g27904_MAGBIO Magnolia biondii HOM05D003083 ORTHO05D003466 1.4e-06 55.8 29 79.3


User provided reference genes

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