Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 8.0e-288 993.4 645 100.0
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 9.9e-230 800.4 650 84.3
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 1.7e-229 799.7 648 84.9
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 2.5e-180 636.3 656 65.4
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 3.4e-153 546.2 669 57.2
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 2.5e-148 530.0 670 58.5
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 4.9e-136 489.2 670 49.9
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 1.3e-133 481.1 683 48.9
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 3.1e-130 469.9 692 50.1
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 6.9e-130 468.8 692 48.8
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 8.4e-128 461.8 684 54.4
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 1.4e-127 461.1 600 49.2
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 1.4e-127 461.1 693 52.8
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 4.6e-126 456.1 686 52.5
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.3e-125 453.8 653 49.2
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 1.5e-124 451.1 690 48.1
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 5.6e-124 449.1 654 51.7
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 6.2e-123 445.7 660 47.7
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 4.0e-122 443.0 607 53.2
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 9.0e-122 441.8 674 47.8
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 2.9e-120 436.8 656 50.8
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 3.8e-120 436.4 694 46.4
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.1e-119 434.9 705 44.8
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 3.2e-119 433.3 620 47.6
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 1.3e-117 427.9 664 49.1
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.8e-117 427.6 660 48.0
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 6.2e-115 419.1 659 45.5
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 4.0e-114 416.4 678 45.3
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 5.3e-114 416.0 669 46.5
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 6.9e-114 415.6 669 49.3
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 9.9e-113 411.8 670 46.3
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 6.4e-112 409.1 651 45.8
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 8.4e-112 408.7 661 50.7
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 2.1e-110 404.1 667 44.7
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 3.9e-109 399.8 657 50.2
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 3.9e-109 399.8 652 43.7
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 2.1e-107 394.0 676 43.2
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 2.1e-107 394.0 672 50.6
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 8.2e-107 392.1 653 45.6
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 2.4e-106 390.6 728 46.7
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 2.2e-104 384.0 653 46.7
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 2.9e-104 383.6 667 47.8
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 3.2e-103 380.2 665 45.1
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.8e-101 374.4 528 49.1
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 8.7e-101 372.1 648 41.8
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 4.3e-100 369.8 702 47.0
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 3.7e-99 366.7 653 40.6
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 4.2e-95 353.2 692 44.9
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 1.2e-94 351.7 657 46.9
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 1.2e-94 351.7 684 40.5
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 4.6e-94 349.7 673 43.7
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 7.9e-94 349.0 705 45.7
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 3.0e-93 347.1 623 47.2
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 8.8e-93 345.5 709 44.0
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 1.9e-92 344.4 667 40.2
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 9.7e-92 342.0 520 47.5
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 1.7e-91 341.3 669 42.3
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 6.9e-90 335.9 696 39.9
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.9e-90 335.9 656 47.7
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.9e-90 335.9 654 47.9
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.2e-89 335.1 662 44.6
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 1.5e-89 334.7 687 46.1
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 5.9e-89 332.8 648 39.5
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 1.7e-88 331.3 670 40.6
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.9e-87 327.8 698 43.7
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 2.7e-86 323.9 694 43.8
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.0e-84 317.8 705 43.0
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 5.7e-84 316.2 656 47.4
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 9.7e-84 315.5 654 47.9
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 1.3e-83 315.1 655 46.9
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 2.8e-83 313.9 597 46.4
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 7.7e-81 305.8 571 46.1
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 6.5e-80 302.8 657 43.2
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 5.5e-79 299.7 664 44.0
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 5.5e-79 299.7 541 47.9
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 6.1e-78 296.2 636 41.4
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.0e-77 295.4 653 38.9
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.4e-77 295.0 655 43.5
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 5.2e-77 293.1 650 44.0
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 1.7e-75 288.1 669 43.8
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 2.8e-75 287.3 653 40.4
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 5.0e-72 276.6 642 43.6
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 2.5e-71 274.2 551 44.5
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 1.6e-70 271.6 654 38.1
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 3.0e-69 267.3 647 42.7
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 1.5e-68 265.0 668 43.7
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 7.5e-68 262.7 669 46.0
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 2.8e-67 260.8 546 46.3
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 1.1e-66 258.8 663 34.1
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.2e-65 255.4 507 44.2
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.0e-65 254.6 345 49.6
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 6.5e-64 249.6 625 38.6
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 9.4e-63 245.7 441 43.1
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.8e-61 241.5 683 34.1
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.6e-57 228.4 448 37.3
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.5e-57 227.3 589 44.3
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 7.7e-57 226.1 662 39.4
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 5.0e-56 223.4 680 32.8
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 6.6e-56 223.0 579 35.1
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 8.6e-56 222.6 685 32.6
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 1.5e-55 221.9 671 34.9
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 5.5e-55 219.9 271 56.5
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 6.8e-53 213.0 713 33.7
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.2e-52 212.2 436 36.5
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 3.4e-52 210.7 650 36.3
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 2.2e-51 208.0 656 37.2
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 5.4e-50 203.4 644 36.0
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.6e-49 201.8 439 41.5
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 2.7e-49 201.1 647 36.0
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 2.7e-49 201.1 647 35.9
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 2.5e-47 194.5 684 30.8
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.7e-40 171.8 347 38.9
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 1.1e-31 142.5 195 44.6
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 1.6e-30 138.7 316 39.6
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 3.6e-30 137.5 193 63.2
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 1.5e-28 132.1 573 30.2
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 9.2e-26 122.9 625 31.8
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 2.1e-25 121.7 368 36.7
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.4e-21 108.2 162 42.6
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 2.4e-21 108.2 289 37.4
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 8.9e-21 106.3 143 49.7
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 3.8e-19 100.9 618 25.9
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 6.0e-17 93.6 132 49.2
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 5.1e-16 90.5 227 39.6
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 4.3e-15 87.4 484 31.6
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 1.4e-13 82.4 682 27.3
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 5.3e-13 80.5 103 53.4
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 6.9e-13 80.1 103 53.4
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.9e-11 74.7 102 51.0
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 7.1e-10 70.1 140 47.1
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 1.6e-09 68.9 133 36.8
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 4.8e-06 57.4 578 23.0


User provided reference genes

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