Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 2.6e-143 512.7 409 100.0
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 9.7e-114 414.5 406 85.2
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 3.1e-112 409.5 405 80.0
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 4.5e-111 405.6 407 81.1
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 9.4e-109 397.9 409 78.5
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 5.7e-106 388.7 411 79.8
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 5.7e-106 388.7 399 80.2
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 1.3e-105 387.5 411 79.6
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 3.7e-105 386.0 403 78.7
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 1.1e-104 384.4 405 82.5
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 2.4e-104 383.3 404 83.9
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 4.1e-104 382.5 405 78.8
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 4.1e-104 382.5 404 80.2
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 5.9e-103 378.6 404 78.5
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 1.3e-102 377.5 405 81.0
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 1.3e-102 377.5 407 76.9
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 4.2e-101 372.5 405 78.5
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 7.2e-101 371.7 405 80.5
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 2.7e-100 369.8 465 63.4
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 3.6e-100 369.4 405 79.0
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 3.6e-100 369.4 409 76.5
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 4.7e-100 369.0 404 76.0
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 3.0e-99 366.3 404 76.5
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 5.2e-99 365.5 404 76.7
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 6.8e-99 365.2 408 79.9
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 8.8e-99 364.8 405 80.0
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 2.0e-98 363.6 402 75.9
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 7.5e-98 361.7 404 79.7
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 1.3e-97 360.9 405 78.8
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 1.7e-97 360.5 404 78.0
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 1.7e-97 360.5 402 80.1
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 2.2e-97 360.1 405 75.3
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 2.2e-97 360.1 405 75.6
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 3.7e-97 359.4 405 74.3
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 4.8e-97 359.0 405 74.3
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 4.8e-97 359.0 407 78.6
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 6.3e-97 358.6 405 76.0
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 6.3e-97 358.6 405 76.0
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 1.8e-96 357.1 403 71.7
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 1.8e-96 357.1 413 74.6
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 3.1e-96 356.3 403 79.7
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 9.1e-96 354.8 404 78.7
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 9.1e-96 354.8 407 74.9
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 9.1e-96 354.8 404 80.7
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 1.2e-95 354.4 405 75.3
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 1.6e-95 354.0 403 79.4
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 2.7e-95 353.2 405 79.8
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 2.7e-95 353.2 402 79.1
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 3.5e-95 352.8 402 79.4
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 4.5e-95 352.4 404 79.0
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 5.9e-95 352.1 404 79.7
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 2.9e-94 349.7 406 77.1
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 5.0e-94 349.0 405 78.3
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 1.1e-93 347.8 410 77.8
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 5.5e-93 345.5 405 73.8
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 5.5e-93 345.5 404 76.0
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 9.5e-93 344.7 400 78.8
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 1.6e-92 344.0 405 78.0
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 3.6e-92 342.8 392 75.5
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 3.6e-92 342.8 405 77.0
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 8.0e-92 341.7 397 77.1
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 1.0e-91 341.3 403 72.2
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 2.3e-91 340.1 405 76.8
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 1.5e-90 337.4 406 74.6
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 2.0e-90 337.0 405 72.6
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 2.6e-90 336.7 408 73.5
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 1.3e-89 334.3 405 76.3
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 3.7e-89 332.8 405 72.6
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 8.3e-89 331.6 400 74.0
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 2.7e-87 326.6 404 69.8
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 4.5e-87 325.9 405 76.3
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 7.8e-87 325.1 399 73.2
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 4.3e-85 319.3 404 72.8
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 3.1e-83 313.2 406 70.7
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 8.9e-83 311.6 405 70.1
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 9.8e-82 308.1 401 74.8
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 1.7e-81 307.4 432 57.2
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 5.4e-80 302.4 402 72.1
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 6.0e-79 298.9 405 70.9
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 4.3e-77 292.7 537 51.2
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 1.6e-76 290.8 400 66.5
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 1.7e-73 280.8 408 67.6
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 8.3e-73 278.5 403 72.2
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 3.2e-72 276.6 398 74.6
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 3.2e-72 276.6 403 70.5
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 7.8e-71 271.9 398 61.8
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 3.0e-70 270.0 425 57.6
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 3.0e-70 270.0 405 67.7
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 1.5e-69 267.7 400 73.8
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 2.1e-68 263.8 408 72.1
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 1.4e-67 261.2 403 70.5
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 4.0e-67 259.6 400 68.5
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 4.0e-67 259.6 404 70.8
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 1.8e-59 234.2 401 68.3
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 2.0e-58 230.7 184 71.2
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 2.6e-58 230.3 415 55.4
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 9.6e-53 211.8 184 66.8
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 4.8e-52 209.5 393 67.2
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 1.3e-49 201.4 180 58.9
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 8.4e-49 198.7 407 64.6
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 1.0e-46 191.8 403 64.8
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 2.4e-43 180.6 182 52.2
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 2.2e-41 174.1 399 61.4
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 1.4e-40 171.4 154 60.4
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 2.7e-39 167.2 393 42.7
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 2.3e-38 164.1 108 70.4
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 2.3e-38 164.1 108 70.4
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 2.4e-35 154.1 403 59.6
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 4.9e-33 146.4 96 74.0
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 3.2e-32 143.7 108 62.0
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 2.3e-30 137.5 94 71.3
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 5.8e-26 122.9 105 56.2
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 6.7e-22 109.4 70 70.0
BcaC04g21805 Brassica carinata HOM05D006667 ORTHO05D008387 3.9e-14 83.6 75 76.0
C06p28130 Brassica napus HOM05D006667 ORTHO05D008387 2.6e-10 70.9 97 57.7
C09p27300 Brassica napus HOM05D006667 ORTHO05D008387 1.3e-09 68.6 119 52.1
BolC6t37979H Brassica oleracea HOM05D006667 ORTHO05D008387 3.8e-09 67.0 97 56.7
BolC6t38487H Brassica oleracea HOM05D006667 ORTHO05D008387 1.1e-08 65.5 97 60.8
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 1.6e-07 61.6 140 30.0
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 2.7e-07 60.8 141 29.8
Sed0004605 Sechium edule HOM05D001818 ORTHO05D001780 3.6e-07 60.5 146 27.4
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 4.7e-07 60.1 140 29.3
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 4.7e-07 60.1 140 30.0
QL12p041348 Quercus lobata HOM05D002813 ORTHO05D003203 1.4e-06 58.5 142 30.3
Hund19853 Selenicereus undatus HOM05D002125 ORTHO05D002105 2.3e-06 57.8 87 31.0
vmacro11170 Vaccinium macrocarpon HOM05D001818 ORTHO05D001780 2.3e-06 57.8 99 31.3


User provided reference genes

Program Settings