Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p044430 Quercus lobata HOM05D001046 ORTHO05D005883 3.0e-53 211.5 99 100.0
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 2.5e-15 85.5 41 97.6
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 2.5e-15 85.5 41 97.6
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 3.3e-15 85.1 41 97.6
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 1.2e-14 83.2 55 74.5
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 1.2e-14 83.2 41 97.6
arahy.Tifrunner.gnm1.ann1.4S8EHX Arachis hypogaea HOM05D001046 ORTHO05D005883 1.6e-14 82.8 41 92.7
arahy.Tifrunner.gnm1.ann1.A78PMJ Arachis hypogaea HOM05D001046 ORTHO05D005883 1.6e-14 82.8 41 92.7
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 2.1e-14 82.4 41 95.1
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 1.1e-13 80.1 41 87.8
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 1.8e-13 79.3 51 80.4
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 1.8e-13 79.3 44 88.6
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 2.3e-13 79.0 44 88.6
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 2.3e-13 79.0 44 88.6
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 2.3e-13 79.0 44 88.6
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 2.3e-13 79.0 44 88.6
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 5.2e-13 77.8 41 85.4
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 6.8e-13 77.4 41 90.2
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 8.9e-13 77.0 41 87.8
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 8.9e-13 77.0 42 90.5
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 1.5e-12 76.3 44 86.4
Lalb_Chr04g0255061 Lupinus albus HOM05D001046 ORTHO05D005883 2.0e-12 75.9 42 83.3
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 2.6e-12 75.5 41 82.9
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 3.4e-12 75.1 41 85.4
Ca_05116_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 4.4e-12 74.7 44 79.5
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 4.4e-12 74.7 44 84.1
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 5.8e-12 74.3 41 85.4
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 5.8e-12 74.3 36 97.2
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 5.8e-12 74.3 42 85.7
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 5.8e-12 74.3 41 85.4
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 5.8e-12 74.3 72 55.6
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 5.8e-12 74.3 72 55.6
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 7.5e-12 73.9 42 88.1
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 7.5e-12 73.9 41 85.4
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 7.5e-12 73.9 40 87.5
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 7.5e-12 73.9 40 87.5
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 9.9e-12 73.6 46 80.4
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 9.9e-12 73.6 46 80.4
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 1.3e-11 73.2 40 85.0
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 1.3e-11 73.2 41 80.5
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 1.3e-11 73.2 41 80.5
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 1.3e-11 73.2 41 80.5
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 1.7e-11 72.8 41 80.5
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 2.2e-11 72.4 39 84.6
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.2e-11 72.4 42 83.3
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 2.2e-11 72.4 41 82.9
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 2.9e-11 72.0 38 89.5
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 3.7e-11 71.6 41 78.0
Cpa.g.sc1.256 Carica papaya HOM05D001046 ORTHO05D005883 3.7e-11 71.6 43 83.7
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 4.9e-11 71.2 41 80.5
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 4.9e-11 71.2 42 83.3
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 4.9e-11 71.2 42 83.3
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 6.4e-11 70.9 41 78.0
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 6.4e-11 70.9 40 82.5
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 8.3e-11 70.5 37 86.5
MBI15_g34975_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 8.3e-11 70.5 45 68.9
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 8.3e-11 70.5 43 69.8
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 1.1e-10 70.1 39 84.6
MBI15_g45230_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.1e-10 70.1 41 75.6
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 1.1e-10 70.1 37 81.1
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 1.4e-10 69.7 38 84.2
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 1.4e-10 69.7 38 84.2
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 1.4e-10 69.7 38 84.2
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 1.4e-10 69.7 38 78.9
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 1.9e-10 69.3 41 78.0
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 1.9e-10 69.3 40 80.0
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 3.2e-10 68.6 38 81.6
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 3.2e-10 68.6 38 81.6
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 3.2e-10 68.6 38 81.6
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 3.2e-10 68.6 38 81.6
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 4.1e-10 68.2 36 88.9
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 5.4e-10 67.8 37 81.1
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 5.4e-10 67.8 37 86.5
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 7.1e-10 67.4 40 75.0
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 7.1e-10 67.4 41 75.6
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 9.2e-10 67.0 38 81.6
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 1.2e-09 66.6 42 78.6
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 1.2e-09 66.6 37 73.0
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 1.2e-09 66.6 37 78.4
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 1.2e-09 66.6 37 78.4
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 2.1e-09 65.9 38 76.3
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 2.7e-09 65.5 37 75.7
PGSC0003DMG400025125 Solanum tuberosum HOM05D001046 ORTHO05D005883 2.7e-09 65.5 37 75.7
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 3.5e-09 65.1 38 76.3
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 4.6e-09 64.7 38 78.9
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 4.6e-09 64.7 41 73.2
CDE04G0426 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 3.0e-08 62.0 40 70.0
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 3.9e-08 61.6 37 70.3
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 1.5e-07 59.7 42 69.0
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 5.6e-07 57.8 37 64.9
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 1.2e-06 56.6 47 53.2
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 6.2e-06 54.3 36 66.7


User provided reference genes

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