Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 2.0e-225 785.4 397 100.0
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 8.4e-179 630.6 401 84.5
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 4.0e-157 558.5 400 76.8
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 2.8e-142 509.2 425 67.3
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 1.7e-134 483.4 436 63.8
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 4.5e-132 475.3 407 68.3
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 6.8e-120 434.9 406 62.1
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 8.8e-120 434.5 401 61.8
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.2e-119 434.1 414 61.4
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 3.4e-119 432.6 427 61.4
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 5.7e-119 431.8 432 60.2
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 2.8e-118 429.5 405 60.5
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 2.8e-118 429.5 405 60.5
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.7e-115 420.2 406 58.4
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 1.1e-114 417.5 429 59.9
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 4.2e-114 415.6 408 60.0
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 7.2e-114 414.8 405 59.8
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 8.8e-112 407.9 403 59.6
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 5.7e-111 405.2 408 59.6
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.3e-110 404.1 407 60.4
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.2e-110 403.3 427 57.6
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 2.8e-110 402.9 402 60.7
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 4.8e-110 402.1 411 57.7
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.8e-110 402.1 435 56.8
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 6.3e-110 401.7 434 56.5
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.4e-109 400.6 435 57.0
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.4e-109 400.6 435 56.6
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 2.3e-107 393.3 345 64.9
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 8.6e-107 391.3 425 55.8
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.5e-106 390.6 421 58.2
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 2.1e-105 386.7 410 56.8
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.8e-104 383.6 414 58.0
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 5.2e-104 382.1 250 80.8
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 5.2e-104 382.1 414 57.7
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 2.0e-103 380.2 428 56.5
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 2.6e-103 379.8 390 57.9
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.6e-100 370.5 409 55.0
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 4.5e-100 369.0 431 55.0
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 2.3e-99 366.7 408 55.4
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.9e-99 365.9 409 54.5
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 5.6e-98 362.1 427 53.9
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.1e-97 360.1 410 56.3
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 8.9e-96 354.8 428 54.9
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 2.9e-94 349.7 414 54.8
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 6.0e-92 342.0 392 55.1
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.7e-91 340.5 391 54.0
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.1e-90 337.8 420 53.3
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.5e-90 337.4 402 52.5
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.6e-89 332.8 403 52.6
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.3e-88 330.1 404 52.2
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 4.9e-86 322.4 378 56.6
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 6.6e-83 312.0 317 58.0
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 3.3e-82 309.7 415 50.6
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.2e-78 297.0 384 49.7
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.9e-78 295.8 393 46.1
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.4e-77 294.3 405 51.1
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.4e-77 294.3 405 51.1
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 5.4e-77 292.4 431 47.3
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 2.3e-75 287.0 411 49.6
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 3.9e-75 286.2 449 45.2
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 8.6e-75 285.0 406 45.6
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.1e-74 284.6 395 47.8
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-72 278.1 386 46.9
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-72 278.1 386 46.9
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.2e-71 274.6 383 47.3
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 2.0e-71 273.9 410 47.3
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 5.8e-71 272.3 433 45.3
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.9e-70 270.0 393 47.1
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 2.9e-70 270.0 254 63.8
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 4.9e-70 269.2 401 44.4
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 6.4e-70 268.9 441 44.4
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.4e-69 266.9 410 42.9
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.7e-68 263.5 402 47.8
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 2.7e-68 263.5 404 43.3
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.3e-67 261.2 410 43.4
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.7e-67 260.8 383 45.4
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 3.0e-67 260.0 382 44.0
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 3.3e-66 256.5 400 43.8
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.8e-65 253.4 403 44.2
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 8.1e-65 251.9 401 44.1
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.5e-63 247.7 403 43.7
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 5.4e-61 239.2 402 43.3
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 2.8e-57 226.9 389 41.6
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 2.8e-57 226.9 389 41.6
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 6.9e-56 222.2 414 42.5
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 7.6e-55 218.8 386 41.7
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.2e-54 217.2 474 36.9
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 6.4e-54 215.7 410 42.2
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.4e-53 214.5 398 41.0
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 2.7e-52 210.3 478 34.9
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.3e-51 207.2 482 37.1
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 8.7e-51 205.3 429 37.5
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 2.8e-49 200.3 397 39.3
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 3.7e-49 199.9 416 37.5
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.8e-48 197.6 386 38.1
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 2.0e-47 194.1 394 39.1
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 2.0e-47 194.1 397 38.3
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 4.5e-47 193.0 413 38.5
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 4.5e-47 193.0 397 39.5
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 4.5e-47 193.0 383 37.6
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.3e-46 191.4 392 37.8
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 2.9e-46 190.3 383 36.6
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.4e-45 188.0 102 95.1
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.4e-45 188.0 396 39.9
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.4e-45 188.0 396 39.9
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 5.5e-45 186.0 398 38.9
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 7.1e-45 185.7 471 36.1
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 9.3e-45 185.3 404 36.1
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 2.7e-44 183.7 416 37.5
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 7.9e-44 182.2 415 38.3
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 7.9e-44 182.2 415 38.3
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.3e-43 181.4 423 37.8
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.8e-43 181.0 439 34.9
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 9.6e-42 175.3 412 35.2
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 9.6e-42 175.3 435 35.4
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 9.6e-42 175.3 439 34.9
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.6e-41 174.5 390 37.7
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 2.1e-41 174.1 435 35.6
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 6.2e-41 172.6 264 42.8
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 4.1e-40 169.9 435 34.5
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 9.0e-40 168.7 433 35.3
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 1.9e-37 161.0 402 35.3
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.5e-37 160.6 304 41.8
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-36 158.3 395 34.9
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.2e-36 158.3 467 32.3
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 1.2e-36 158.3 386 35.8
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 1.6e-36 157.9 337 39.2
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 3.3e-34 150.2 307 39.7
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 2.2e-33 147.5 406 34.0
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 3.7e-33 146.7 471 32.9
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 6.3e-33 146.0 388 35.3
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.1e-32 145.2 390 34.1
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 6.9e-32 142.5 349 36.7
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 3.4e-31 140.2 232 46.6
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 5.9e-31 139.4 268 41.8
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 5.9e-31 139.4 417 32.4
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.7e-30 137.9 224 45.1
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 2.2e-30 137.5 441 33.1
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.9e-29 134.4 190 42.6
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 2.7e-28 130.6 448 32.6
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.0e-27 128.6 388 32.7
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 1.4e-27 128.3 388 32.7
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 5.1e-27 126.3 388 33.5
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.3e-25 121.7 438 30.8
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.3e-25 121.7 438 29.7
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 3.1e-24 117.1 433 29.8
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 7.9e-20 102.4 328 31.4
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.6e-18 97.4 105 57.1
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 4.4e-18 96.7 140 44.3
Haze_13037 Corylus avellana HOM05D004568 ORTHO05D005343 5.7e-18 96.3 74 70.3
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 8.2e-17 92.4 183 37.2
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 9.1e-16 89.0 75 65.3
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.2e-15 88.6 171 39.8
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 3.2e-13 80.5 128 38.3
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.2e-13 80.1 173 37.0
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.6e-12 77.0 135 38.5
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 2.0e-10 71.2 146 37.7
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 2.4e-08 64.3 143 32.2
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 2.2e-06 57.8 197 29.9


User provided reference genes

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