Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p043796 Quercus lobata HOM05D005588 ORTHO05D006615 6.6e-167 590.5 273 100.0
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 8.3e-77 291.2 170 78.2
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 5.4e-76 288.5 221 61.1
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 7.0e-76 288.1 175 72.0
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 5.9e-75 285.0 239 58.6
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.9e-74 282.7 175 73.7
MD13G1007300 Malus domestica HOM05D005588 ORTHO05D006615 1.1e-73 280.8 192 66.1
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 1.5e-73 280.4 219 60.3
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 1.5e-73 280.4 170 75.9
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 1.9e-73 280.0 175 73.1
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 2.5e-73 279.6 166 76.5
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 2.5e-73 279.6 219 60.7
TWI74G1417 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 9.5e-73 277.7 180 70.0
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 3.6e-72 275.8 210 63.8
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 5.2e-71 271.9 175 70.3
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 5.2e-71 271.9 174 70.1
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 1.5e-70 270.4 173 71.7
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 2.6e-70 269.6 223 57.0
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 1.3e-69 267.3 170 72.9
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 1.7e-69 266.9 169 72.2
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 3.7e-69 265.8 216 56.9
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 6.4e-69 265.0 180 64.4
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 8.3e-69 264.6 176 67.0
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 8.3e-69 264.6 170 72.4
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 1.4e-68 263.8 174 66.7
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 2.4e-68 263.1 174 66.7
Sed0002544 Sechium edule HOM05D005588 ORTHO05D006615 3.2e-68 262.7 179 66.5
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 9.2e-68 261.2 170 72.4
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 9.2e-68 261.2 175 66.3
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 2.0e-67 260.0 170 67.6
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 3.5e-67 259.2 175 66.3
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 3.5e-67 259.2 174 67.8
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 4.6e-67 258.8 175 66.9
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 6.0e-67 258.5 174 64.4
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 7.8e-67 258.1 172 69.2
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 7.8e-67 258.1 180 65.6
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 1.0e-66 257.7 170 66.5
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 1.0e-66 257.7 171 68.4
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 2.3e-66 256.5 174 66.7
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 2.3e-66 256.5 177 66.7
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 3.9e-66 255.8 176 63.1
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 5.0e-66 255.4 187 59.4
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 1.1e-65 254.2 174 67.2
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 1.9e-65 253.4 176 68.8
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 2.5e-65 253.1 171 66.1
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 7.3e-65 251.5 178 61.2
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 1.2e-64 250.8 170 65.3
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 2.8e-64 249.6 179 64.2
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 3.6e-64 249.2 169 64.5
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 4.7e-64 248.8 175 64.0
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 8.0e-64 248.1 178 64.6
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 1.1e-63 247.7 175 62.3
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 1.1e-63 247.7 205 55.6
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 1.1e-63 247.7 175 62.9
Gohir.D05G307832 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.4e-63 247.3 183 61.7
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 1.8e-63 246.9 204 55.4
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 1.8e-63 246.9 175 62.9
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 2.3e-63 246.5 171 63.2
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 3.1e-63 246.1 220 55.9
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 3.1e-63 246.1 171 63.2
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 4.0e-63 245.7 170 63.5
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 5.2e-63 245.4 180 63.3
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 8.9e-63 244.6 175 61.1
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 2.0e-62 243.4 174 59.2
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 2.6e-62 243.0 175 61.1
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 2.6e-62 243.0 175 61.1
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 2.6e-62 243.0 171 63.2
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 7.5e-62 241.5 167 67.1
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 9.8e-62 241.1 167 63.5
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 9.8e-62 241.1 167 63.5
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 9.8e-62 241.1 167 63.5
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 3.7e-61 239.2 178 61.2
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 4.9e-61 238.8 169 63.9
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 6.4e-61 238.4 163 64.4
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 6.4e-61 238.4 216 51.4
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.4e-60 237.3 163 66.9
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 1.9e-60 236.9 169 63.3
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 1.9e-60 236.9 163 66.9
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 2.1e-59 233.4 163 63.8
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 4.6e-59 232.3 170 57.6
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 1.0e-58 231.1 221 48.9
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 1.0e-58 231.1 164 66.5
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 1.3e-58 230.7 158 63.9
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 3.0e-58 229.6 176 59.1
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 3.9e-58 229.2 163 62.6
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 6.6e-58 228.4 164 65.2
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 2.5e-57 226.5 200 52.0
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 3.3e-57 226.1 216 49.5
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 4.3e-57 225.7 163 61.3
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 4.3e-57 225.7 164 64.0
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 3.6e-56 222.6 188 55.3
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 1.8e-55 220.3 163 60.7
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 1.8e-55 220.3 163 60.7
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 1.8e-55 220.3 163 60.7
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 1.8e-55 220.3 162 64.2
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 1.8e-55 220.3 177 58.2
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 1.7e-53 213.8 169 59.8
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 6.4e-53 211.8 165 58.8
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 8.3e-53 211.5 163 58.3
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 1.1e-52 211.1 163 57.7
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 3.2e-52 209.5 169 58.0
COL.COLO4_27672 Corchorus olitorius HOM05D005588 ORTHO05D006615 1.2e-48 197.6 169 55.6
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 3.6e-48 196.1 162 56.2
SEGI_36505 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 6.8e-47 191.8 177 49.7
CiPaw.09G164500 Carya illinoinensis HOM05D005588 ORTHO05D006615 5.8e-46 188.7 153 60.1
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 1.7e-45 187.2 164 53.7
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 3.8e-45 186.0 136 66.2
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 3.2e-44 183.0 122 72.1
AUR62015207 Chenopodium quinoa HOM05D005588 ORTHO05D006615 1.9e-41 173.7 169 49.1
Ca_27076_v3 Cicer arietinum L. HOM05D005588 ORTHO05D006615 6.2e-40 168.7 105 70.5
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 6.2e-40 168.7 166 49.4
Gohir.A05G307500 Gossypium hirsutum HOM05D005588 ORTHO05D006615 4.0e-39 166.0 105 71.4
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 6.9e-39 165.2 176 46.0
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 1.1e-36 157.9 166 44.0
AagrBONN_evm.TU.Sc2ySwM_228.4026 Anthoceros agrestis HOM05D005588 ORTHO05D006615 2.4e-36 156.8 168 45.2
CAN.G624.25 Capsicum annuum HOM05D005588 ORTHO05D006615 2.4e-36 156.8 116 62.9
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 9.3e-36 154.8 165 52.1
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 3.9e-34 149.4 118 61.0
Thhalv10021331m.g Eutrema salsugineum HOM05D005588 ORTHO05D006615 6.6e-34 148.7 100 68.0
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.9e-33 147.1 111 58.6
Gohir.D13G024600 Gossypium hirsutum HOM05D005588 ORTHO05D006615 5.6e-33 145.6 94 70.2
Psat7g173520 Pisum sativum HOM05D005588 ORTHO05D006615 9.6e-33 144.8 96 69.8
SMO146G0139 Selaginella moellendorffii HOM05D005588 ORTHO05D006615 1.6e-32 144.1 162 43.2
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 9.6e-25 118.2 76 67.1
Sabra07G0059300 Salix brachista HOM05D005588 ORTHO05D006615 1.6e-24 117.5 91 61.5
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 2.8e-24 116.7 77 64.9
FAN12G1938 Fragaria x ananassa HOM05D005588 ORTHO05D006615 8.4e-21 105.1 80 58.8
Os06g0308900 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 3.2e-20 103.2 80 63.8
CBR_g50402 Chara braunii HOM05D005588 ORTHO05D006615 4.6e-19 99.4 118 43.2
AagrBONN_evm.TU.Sc2ySwM_362.2362 Anthoceros agrestis HOM05D005588 ORTHO05D006615 6.9e-15 85.5 90 42.2
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 9.0e-15 85.1 104 41.3
Cre16.g693800 Chlamydomonas reinhardtii HOM05D002026 ORTHO05D006615 1.8e-10 70.9 251 24.7
MCO12G089 Micromonas commoda HOM05D000571 ORTHO05D003096 1.8e-07 60.8 206 26.2
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 9.0e-07 58.5 35 71.4
Glyma.18G220400 Glycine max HOM05D000968 ORTHO05D001687 9.0e-07 58.5 47 48.9
Gohir.D09G189200 Gossypium hirsutum HOM05D000968 ORTHO05D001687 2.0e-06 57.4 156 27.6
HanXRQChr09g0246851 Helianthus annuus HOM05D000968 ORTHO05D003096 2.0e-06 57.4 165 29.1
Sp4g27420 Schrenkiella parvula HOM05D000968 ORTHO05D001687 2.6e-06 57.0 67 38.8
Aa31LG1G26900 Aethionema arabicum HOM05D000968 ORTHO05D001687 5.9e-06 55.8 37 54.1
Aa31LG6G4740 Aethionema arabicum HOM05D000968 ORTHO05D001687 5.9e-06 55.8 82 32.9
AL4G44520 Arabidopsis lyrata HOM05D000968 ORTHO05D001687 5.9e-06 55.8 37 54.1
CSS0046701 Camellia sinensis var. sinensis HOM05D000968 ORTHO05D003096 5.9e-06 55.8 150 31.3
Thhalv10001560m.g Eutrema salsugineum HOM05D000968 ORTHO05D001687 5.9e-06 55.8 37 54.1
Mapoly0101s0046 Marchantia polymorpha HOM05D000968 ORTHO05D001687 7.7e-06 55.5 44 50.0
Aa31LG10G15040 Aethionema arabicum HOM05D000968 ORTHO05D001687 1.0e-05 55.1 68 38.2
Thhalv10006120m.g Eutrema salsugineum HOM05D000968 ORTHO05D001687 1.0e-05 55.1 47 48.9


User provided reference genes

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