Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 3.0e-41 171.4 86 100.0
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 6.7e-33 143.7 81 90.1
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 2.6e-24 115.2 89 68.5
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 2.6e-24 115.2 89 68.5
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 5.7e-24 114.0 60 91.7
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 6.3e-23 110.5 63 84.1
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 1.1e-22 109.8 61 85.2
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.8e-22 109.0 63 82.5
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 1.8e-22 109.0 62 83.9
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 9.1e-22 106.7 63 81.0
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 1.6e-21 105.9 61 82.0
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 2.0e-21 105.5 63 81.0
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 2.7e-21 105.1 61 83.6
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 2.7e-21 105.1 61 80.3
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 4.5e-21 104.4 63 77.8
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 4.5e-21 104.4 61 78.7
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 4.5e-21 104.4 61 78.7
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 5.9e-21 104.0 63 77.8
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 7.7e-21 103.6 61 80.3
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 1.0e-20 103.2 61 80.3
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 1.0e-20 103.2 61 77.0
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 1.3e-20 102.8 63 79.4
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 1.3e-20 102.8 61 78.7
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 1.7e-20 102.4 60 81.7
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 2.2e-20 102.1 63 76.2
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 2.2e-20 102.1 61 77.0
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 2.2e-20 102.1 61 77.0
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 2.2e-20 102.1 61 75.4
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 2.2e-20 102.1 61 77.0
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 2.9e-20 101.7 69 68.1
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 2.9e-20 101.7 62 74.2
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 2.9e-20 101.7 63 76.2
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 2.9e-20 101.7 61 78.7
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.9e-20 101.7 61 78.7
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 3.8e-20 101.3 60 78.3
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 3.8e-20 101.3 61 77.0
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 5.0e-20 100.9 60 80.0
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 6.5e-20 100.5 63 74.6
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 6.5e-20 100.5 63 73.0
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 6.5e-20 100.5 63 73.0
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 6.5e-20 100.5 63 76.2
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 6.5e-20 100.5 61 80.3
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 8.5e-20 100.1 63 74.6
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 8.5e-20 100.1 63 76.2
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 1.5e-19 99.4 63 76.2
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 1.9e-19 99.0 61 77.0
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 1.9e-19 99.0 60 76.7
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 1.9e-19 99.0 61 73.8
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.5e-19 98.6 61 77.0
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 2.5e-19 98.6 63 76.2
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 2.5e-19 98.6 60 80.0
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 3.2e-19 98.2 61 78.7
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 4.2e-19 97.8 61 75.4
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 4.2e-19 97.8 64 70.3
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 5.5e-19 97.4 72 63.9
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 7.2e-19 97.1 60 75.0
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 7.2e-19 97.1 60 75.0
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 7.2e-19 97.1 60 76.7
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 9.4e-19 96.7 60 71.7
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 9.4e-19 96.7 61 70.5
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 9.4e-19 96.7 63 71.4
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 9.4e-19 96.7 63 71.4
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 1.2e-18 96.3 61 73.8
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 1.6e-18 95.9 63 69.8
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 1.6e-18 95.9 61 73.8
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 1.6e-18 95.9 69 63.8
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 1.6e-18 95.9 60 73.3
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.1e-18 95.5 61 75.4
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.1e-18 95.5 61 75.4
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 2.1e-18 95.5 60 75.0
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 2.7e-18 95.1 60 73.3
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 4.7e-18 94.4 60 71.7
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 6.1e-18 94.0 60 71.7
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 8.0e-18 93.6 60 71.7
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 8.0e-18 93.6 60 73.3
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 8.0e-18 93.6 60 71.7
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 8.0e-18 93.6 63 69.8
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 1.0e-17 93.2 61 70.5
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 1.4e-17 92.8 63 65.1
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 1.4e-17 92.8 61 72.1
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 1.8e-17 92.4 60 70.0
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 1.8e-17 92.4 60 71.7
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 1.8e-17 92.4 60 71.7
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 1.8e-17 92.4 60 71.7
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 1.8e-17 92.4 60 71.7
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 2.3e-17 92.0 63 65.1
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 2.3e-17 92.0 74 58.1
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 3.0e-17 91.7 60 71.7
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 3.0e-17 91.7 60 71.7
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 4.0e-17 91.3 61 67.2
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 4.0e-17 91.3 61 68.9
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 4.0e-17 91.3 63 66.7
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 5.2e-17 90.9 74 58.1
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 5.2e-17 90.9 61 68.9
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 6.8e-17 90.5 61 70.5
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 6.8e-17 90.5 61 70.5
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 6.8e-17 90.5 61 70.5
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 6.8e-17 90.5 61 70.5
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 8.8e-17 90.1 60 73.3
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 1.2e-16 89.7 60 70.0
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 1.2e-16 89.7 63 68.3
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 2.6e-16 88.6 61 70.5
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 4.4e-16 87.8 66 63.6
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 4.4e-16 87.8 63 66.7
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 4.4e-16 87.8 60 63.3
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 7.5e-16 87.0 66 63.6
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 1.3e-15 86.3 60 61.7
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.7e-15 85.9 63 65.1
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 1.8e-14 82.4 61 65.6
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.4e-14 82.0 51 80.4
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 9.1e-14 80.1 61 59.0
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 3.5e-13 78.2 63 52.4
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 4.5e-13 77.8 61 60.7
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 4.2e-11 71.2 76 50.0
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 2.1e-10 68.9 60 56.7
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 4.0e-09 64.7 72 51.4
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 6.8e-09 63.9 61 52.5


User provided reference genes

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