Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 7.1e-153 543.9 273 100.0
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 3.3e-81 305.8 256 63.7
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 2.1e-64 250.0 227 61.2
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 3.6e-64 249.2 227 62.1
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 8.0e-64 248.1 227 60.8
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 2.3e-58 229.9 224 57.6
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 3.0e-58 229.6 225 53.3
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 2.3e-55 219.9 225 53.3
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 8.9e-55 218.0 225 49.8
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 1.9e-52 210.3 223 54.7
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 2.1e-51 206.8 226 50.0
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 7.8e-51 204.9 225 49.8
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 2.3e-50 203.4 225 48.9
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 3.0e-50 203.0 226 49.6
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 1.5e-49 200.7 226 48.2
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.5e-49 200.7 222 51.8
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.5e-49 200.7 222 51.8
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 1.9e-49 200.3 228 48.7
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.9e-49 200.3 222 51.8
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 1.9e-49 200.3 240 46.2
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 2.5e-49 199.9 229 50.7
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 5.6e-49 198.7 247 44.9
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 7.3e-49 198.4 229 49.3
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 9.6e-49 198.0 226 50.0
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 1.2e-48 197.6 229 48.9
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 1.6e-48 197.2 222 52.7
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 1.6e-48 197.2 231 47.2
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 2.1e-48 196.8 230 49.1
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 2.8e-48 196.4 229 48.5
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 4.7e-48 195.7 223 51.6
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 8.1e-48 194.9 231 47.2
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 1.8e-47 193.7 226 48.2
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 3.1e-47 193.0 225 48.0
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 1.2e-46 191.0 225 49.3
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 3.4e-46 189.5 225 48.9
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 4.4e-46 189.1 228 48.2
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 9.9e-46 188.0 248 43.1
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 1.3e-45 187.6 222 48.6
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.9e-45 186.4 231 44.2
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 3.8e-45 186.0 231 43.7
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 8.4e-45 184.9 231 43.3
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 8.4e-45 184.9 219 46.1
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 1.4e-44 184.1 244 44.7
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 1.4e-44 184.1 225 49.8
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 2.4e-44 183.3 221 46.2
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.4e-44 183.3 229 48.0
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 2.4e-44 183.3 226 46.0
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 5.4e-44 182.2 225 45.3
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 5.4e-44 182.2 216 51.4
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 7.1e-44 181.8 225 45.3
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.2e-43 181.0 225 45.3
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-43 181.0 232 44.4
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 1.6e-43 180.6 221 48.9
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 1.6e-43 180.6 246 41.9
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.7e-43 179.9 231 42.9
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.7e-43 179.9 228 45.6
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 2.7e-43 179.9 221 49.3
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 6.0e-43 178.7 241 43.2
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 3.9e-42 176.0 261 40.2
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.9e-42 176.0 227 45.4
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 5.1e-42 175.6 225 44.9
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 8.7e-42 174.9 227 44.1
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 1.1e-41 174.5 254 40.9
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.9e-41 173.7 225 44.9
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 2.5e-41 173.3 225 44.4
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 3.3e-41 172.9 232 42.2
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 4.3e-41 172.6 241 41.9
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 5.6e-41 172.2 228 44.3
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 9.6e-41 171.4 227 44.9
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 1.3e-40 171.0 224 42.0
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 1.3e-40 171.0 226 43.8
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 2.1e-40 170.2 168 54.8
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.1e-40 170.2 224 42.0
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 2.8e-40 169.9 230 41.3
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 2.8e-40 169.9 238 42.9
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 3.6e-40 169.5 225 44.4
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.6e-40 169.5 224 44.2
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.6e-40 169.5 222 42.8
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 6.2e-40 168.7 222 42.3
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 8.1e-40 168.3 232 41.4
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 8.1e-40 168.3 230 43.0
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 1.4e-39 167.5 219 43.4
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 2.4e-39 166.8 212 45.8
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 2.4e-39 166.8 224 41.5
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 4.0e-39 166.0 229 45.0
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 5.3e-39 165.6 224 42.0
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 5.3e-39 165.6 225 44.9
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 2.6e-38 163.3 216 43.1
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 2.6e-38 163.3 236 42.8
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 2.6e-38 163.3 228 44.3
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 3.4e-38 162.9 223 46.2
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 7.6e-38 161.8 229 41.0
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 7.6e-38 161.8 261 37.2
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 2.9e-37 159.8 223 39.9
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 2.9e-37 159.8 223 39.9
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 1.1e-36 157.9 246 39.8
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 1.4e-36 157.5 236 40.3
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 1.9e-36 157.1 245 41.6
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-36 157.1 223 43.9
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 2.4e-36 156.8 226 41.6
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 3.2e-36 156.4 219 40.6
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 3.2e-36 156.4 219 40.6
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 4.2e-36 156.0 221 42.5
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 9.3e-36 154.8 227 41.9
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.2e-35 154.5 227 42.7
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 1.6e-35 154.1 245 40.4
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 2.1e-35 153.7 225 41.8
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 3.5e-35 152.9 210 41.9
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.6e-35 152.5 240 42.5
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 6.0e-35 152.1 223 38.1
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 1.0e-34 151.4 224 38.8
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 1.0e-34 151.4 221 39.4
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 1.0e-34 151.4 223 38.1
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 1.0e-34 151.4 223 38.1
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 1.3e-34 151.0 225 42.7
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 1.3e-34 151.0 224 41.1
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 3.0e-34 149.8 237 39.2
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 5.1e-34 149.1 228 40.4
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 5.1e-34 149.1 194 41.8
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 6.6e-34 148.7 228 40.8
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 8.7e-34 148.3 223 39.5
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 8.7e-34 148.3 228 40.4
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 8.7e-34 148.3 229 39.7
Migut.K00759 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.1e-33 147.9 240 42.1
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.5e-33 147.5 221 40.7
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 1.9e-33 147.1 224 37.5
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 5.6e-33 145.6 221 38.9
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 5.6e-33 145.6 221 38.9
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 7.3e-33 145.2 221 38.5
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 9.6e-33 144.8 251 39.4
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 8.1e-32 141.7 221 39.4
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 8.1e-32 141.7 225 42.2
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 1.1e-31 141.4 267 37.5
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 1.4e-31 141.0 225 39.6
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 2.4e-31 140.2 221 38.9
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 2.4e-31 140.2 226 39.8
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.4e-31 140.2 222 38.3
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 2.4e-31 140.2 222 38.3
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-30 137.9 207 39.1
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 1.5e-30 137.5 212 39.2
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 9.9e-30 134.8 168 44.6
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 9.9e-30 134.8 221 38.5
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 1.4e-28 131.0 210 36.7
Migut.I00368 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.4e-28 131.0 159 48.4
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 3.5e-27 126.3 234 33.8
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 7.9e-27 125.2 134 47.8
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 3.0e-26 123.2 226 39.4
HanXRQChr13g0408761 Helianthus annuus HOM05D003325 ORTHO05D003852 1.9e-25 120.6 123 51.2
HanXRQChr04g0099651 Helianthus annuus HOM05D003325 ORTHO05D003852 3.3e-25 119.8 235 38.3
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 4.3e-25 119.4 168 39.3
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 5.6e-25 119.0 224 35.3
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 9.6e-25 118.2 191 39.3
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 2.1e-24 117.1 231 32.9
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 4.5e-22 109.4 122 45.9
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 4.9e-21 105.9 119 49.6
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 7.1e-20 102.1 229 33.2
MD06G1139500 Malus domestica HOM05D003325 ORTHO05D003852 1.6e-19 100.9 80 62.5
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 1.0e-18 98.2 173 36.4
SEGI_12810 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 1.8e-18 97.4 166 32.5
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 5.1e-18 95.9 96 53.1
ClCG03G003870 Citrullus lanatus HOM05D003325 ORTHO05D003852 4.3e-17 92.8 102 54.9
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 2.4e-15 87.0 134 35.8
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 1.2e-14 84.7 164 36.0
QL10p010971 Quercus lobata HOM05D003325 ORTHO05D003852 1.1e-12 78.2 89 52.8
QL10p010962 Quercus lobata HOM05D003325 ORTHO05D003852 1.6e-11 74.3 84 46.4
Aqoxy1G03157 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 2.3e-10 70.5 74 55.4
Aqoxy1G03342 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 2.3e-10 70.5 74 55.4
Aqoxy2G00205 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 5.1e-10 69.3 74 55.4
ATR0561G235 Amborella trichopoda HOM05D003325 ORTHO05D003852 6.7e-10 68.9 90 43.3
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 2.8e-08 63.5 128 34.4
AL3G40400 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 8.2e-08 62.0 55 56.4
arahy.Tifrunner.gnm1.ann1.RXUH3Q Arachis hypogaea HOM05D016848 ORTHO05D014290 8.2e-08 62.0 68 51.5
FAN13G1110 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.4e-07 60.5 64 48.4


User provided reference genes

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