Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 0.0e+00 1575.1 887 100.0
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 2.1e-254 882.9 839 68.4
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 9.9e-204 714.5 883 57.1
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 6.4e-195 685.3 891 54.3
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 1.4e-194 684.1 894 54.6
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 5.4e-194 682.2 889 55.7
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 2.1e-193 680.2 889 53.3
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 1.7e-192 677.2 889 54.0
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 2.3e-192 676.8 889 53.9
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 5.1e-192 675.6 891 54.8
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 2.8e-190 669.8 856 54.9
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 4.2e-186 656.0 896 54.0
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 7.1e-186 655.2 897 54.6
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 3.0e-184 649.8 772 58.5
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 7.3e-183 645.2 890 53.3
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 7.6e-180 635.2 808 55.0
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 2.4e-178 630.2 885 53.0
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 8.7e-176 621.7 888 52.0
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 2.9e-171 606.7 965 41.0
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 7.1e-170 602.1 894 49.9
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 3.5e-169 599.7 854 50.9
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 1.0e-168 598.2 898 50.2
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 2.5e-167 593.6 937 49.4
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 1.3e-166 591.3 862 51.9
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 1.4e-165 587.8 901 50.1
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 1.4e-165 587.8 888 49.0
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 5.3e-165 585.9 910 49.0
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 2.6e-164 583.6 884 48.8
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 3.8e-163 579.7 838 50.7
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 1.0e-160 571.6 757 46.4
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 4.8e-158 562.8 857 49.7
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 1.8e-157 560.8 730 57.0
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 9.0e-157 558.5 877 47.3
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 1.5e-156 557.8 833 51.3
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 3.4e-156 556.6 889 48.9
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 4.8e-150 536.2 973 45.7
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 1.8e-149 534.3 730 55.1
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 4.1e-149 533.1 757 45.8
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 1.0e-147 528.5 856 48.7
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 1.7e-147 527.7 841 49.8
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 2.9e-147 526.9 892 48.0
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 3.8e-147 526.6 891 47.8
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 6.5e-147 525.8 898 45.9
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 9.4e-146 521.9 762 51.4
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 1.8e-144 517.7 867 47.8
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 2.8e-142 510.4 757 52.2
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 1.0e-139 501.9 549 64.5
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 5.5e-138 496.1 898 44.3
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 1.8e-136 491.1 901 44.2
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 4.4e-135 486.5 875 44.6
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 1.1e-130 471.9 785 48.4
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 4.7e-129 466.5 801 47.9
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 6.8e-128 462.6 829 45.8
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 2.4e-125 454.1 898 42.4
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 3.1e-125 453.8 740 40.0
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 1.6e-124 451.4 851 46.3
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 1.0e-123 448.7 581 58.3
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 2.9e-123 447.2 561 46.5
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 1.0e-120 438.7 890 42.6
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 1.2e-119 435.3 441 70.1
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 3.4e-119 433.7 888 43.6
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 2.2e-118 431.0 893 40.6
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 8.3e-118 429.1 890 42.4
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 1.2e-116 425.2 764 46.5
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 1.2e-116 425.2 737 40.2
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 2.0e-116 424.5 794 45.7
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 2.3e-115 421.0 799 45.1
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 3.8e-115 420.2 888 41.2
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 3.8e-115 420.2 800 45.1
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 1.5e-114 418.3 885 41.9
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 1.9e-114 417.9 900 42.2
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 2.1e-113 414.5 887 41.4
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 4.7e-113 413.3 735 36.6
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 4.7e-113 413.3 801 45.3
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 1.5e-111 408.3 890 41.5
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 2.0e-111 407.9 802 45.1
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 3.7e-110 403.7 800 43.4
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 4.1e-109 400.2 893 41.3
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 1.3e-107 395.2 576 42.7
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 6.6e-107 392.9 800 42.8
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 8.6e-107 392.5 830 43.6
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 2.5e-98 364.4 573 51.3
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 2.0e-95 354.8 577 47.7
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 1.3e-94 352.1 550 50.7
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 1.3e-94 352.1 722 43.4
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 1.2e-87 328.9 723 40.9
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 2.6e-87 327.8 695 33.1
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 2.3e-83 314.7 797 39.8
Hma1.2p1_0933F.1_g238410 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 2.4e-72 278.1 460 55.9
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 3.3e-66 257.7 806 31.1
Hma1.2p1_0933F.1_g238400 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 7.6e-63 246.5 347 44.1
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 7.1e-61 240.0 792 33.8
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 1.3e-59 235.7 348 40.5
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 1.7e-54 218.8 466 33.7
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 3.2e-53 214.5 476 32.6
Hund12802 Selenicereus undatus HOM05D006757 ORTHO05D004651 3.5e-52 211.1 418 51.9
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 3.0e-51 208.0 371 40.7
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.6e-49 202.2 186 55.9
CSS0016054 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 2.8e-33 148.3 228 44.7
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 2.8e-33 148.3 295 35.6
SalBow2G2121 Salvia bowleyana HOM05D006757 ORTHO05D004651 5.3e-32 144.1 223 43.9
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 2.2e-30 138.7 737 25.0
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 1.8e-24 119.0 248 34.7
Actinidia37474 Actinidia chinensis HOM05D006757 ORTHO05D004651 4.1e-24 117.9 138 47.1
Zm00001eb320640 Zea mays HOM05D006757 ORTHO05D004651 2.5e-21 108.6 266 33.5
Ciclev10006110m.g Citrus clementina HOM05D006757 ORTHO05D004651 2.3e-19 102.1 170 42.4
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 2.0e-18 99.0 81 63.0
CDE04G0645 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 4.4e-18 97.8 261 30.3
Peaxi162Scf00097g02317 Petunia axillaris HOM05D006757 ORTHO05D004651 1.7e-17 95.9 81 58.0
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 3.7e-17 94.7 75 61.3
Haze_10728 Corylus avellana HOM05D063416 ORTHO05D034208 2.5e-13 82.0 113 47.8
CSS0046499 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 3.2e-13 81.6 45 77.8
Cc11_g03350 Coffea canephora HOM05D006757 ORTHO05D004651 1.2e-12 79.7 125 43.2
vmacro10766 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 1.5e-10 72.8 205 33.7
Cfa015106 Carpinus fangiana HOM05D063416 ORTHO05D034208 1.6e-07 62.8 106 42.5
Hma1.2p1_0933F.1_g238390 Hydrangea macrophylla HOM05D006757 ORTHO05D034208 2.0e-07 62.4 130 41.5
Ah.02g120100 Amaranthus hybridus HOM05D006757 ORTHO05D004651 1.0e-06 60.1 105 43.8


User provided reference genes

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