Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 3.8e-51 204.5 102 100.0
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 3.8e-51 204.5 102 100.0
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 7.2e-42 173.7 102 82.4
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 3.6e-41 171.4 102 81.4
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 1.8e-40 169.1 103 80.6
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 5.2e-40 167.5 101 82.2
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 8.8e-40 166.8 103 80.6
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 8.8e-40 166.8 100 82.0
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 3.3e-39 164.9 101 85.1
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 3.3e-39 164.9 101 85.1
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 3.3e-39 164.9 103 81.6
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 3.3e-39 164.9 103 80.6
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 3.3e-39 164.9 100 81.0
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 4.4e-39 164.5 103 80.6
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 4.4e-39 164.5 104 78.8
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 5.7e-39 164.1 102 79.4
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 5.7e-39 164.1 102 79.4
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 5.7e-39 164.1 102 79.4
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 5.7e-39 164.1 103 81.6
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 7.5e-39 163.7 101 79.2
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 7.5e-39 163.7 102 79.4
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 7.5e-39 163.7 102 79.4
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 9.7e-39 163.3 102 79.4
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 1.3e-38 162.9 103 78.6
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 1.3e-38 162.9 101 78.2
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 1.3e-38 162.9 101 78.2
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 1.7e-38 162.5 100 79.0
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 1.7e-38 162.5 103 79.6
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 2.2e-38 162.2 102 79.4
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 2.2e-38 162.2 101 79.2
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 2.2e-38 162.2 103 79.6
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 2.2e-38 162.2 102 79.4
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.8e-38 161.8 102 78.4
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 2.8e-38 161.8 101 79.2
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 4.8e-38 161.0 105 77.1
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 8.2e-38 160.2 102 78.4
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 8.2e-38 160.2 101 76.2
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 8.2e-38 160.2 100 80.0
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 1.1e-37 159.8 100 81.0
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 1.1e-37 159.8 101 77.2
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 1.1e-37 159.8 100 79.0
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 1.1e-37 159.8 101 79.2
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 1.8e-37 159.1 100 80.0
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 1.8e-37 159.1 102 76.5
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 2.4e-37 158.7 101 82.2
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 2.4e-37 158.7 101 75.2
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 2.4e-37 158.7 101 80.2
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 3.1e-37 158.3 101 76.2
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 7.0e-37 157.1 100 78.0
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 9.1e-37 156.8 101 76.2
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 9.1e-37 156.8 106 75.5
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.2e-36 156.4 101 78.2
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 1.6e-36 156.0 102 75.5
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 2.0e-36 155.6 97 78.4
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.0e-36 155.6 104 74.0
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 2.7e-36 155.2 103 76.7
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 2.7e-36 155.2 103 76.7
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 2.7e-36 155.2 103 76.7
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 2.7e-36 155.2 101 76.2
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.7e-36 155.2 101 78.2
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 2.7e-36 155.2 106 74.5
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 4.5e-36 154.5 102 75.5
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 4.5e-36 154.5 103 74.8
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 5.9e-36 154.1 104 76.9
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 7.7e-36 153.7 102 74.5
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 7.7e-36 153.7 101 76.2
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 7.7e-36 153.7 101 76.2
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 1.0e-35 153.3 103 73.8
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 1.3e-35 152.9 103 75.7
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 1.3e-35 152.9 103 75.7
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 1.3e-35 152.9 103 75.7
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 1.3e-35 152.9 103 75.7
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 1.3e-35 152.9 103 75.7
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 1.3e-35 152.9 104 74.0
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 1.3e-35 152.9 103 75.7
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 1.3e-35 152.9 101 74.3
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.3e-35 152.9 104 73.1
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 1.3e-35 152.9 103 75.7
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.3e-35 152.9 101 76.2
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 1.7e-35 152.5 104 75.0
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 1.7e-35 152.5 103 75.7
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 1.7e-35 152.5 103 75.7
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 1.7e-35 152.5 101 74.3
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 2.2e-35 152.1 100 78.0
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 2.2e-35 152.1 98 74.5
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 2.9e-35 151.8 103 74.8
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 2.9e-35 151.8 103 74.8
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 3.8e-35 151.4 98 75.5
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 5.0e-35 151.0 101 74.3
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 5.0e-35 151.0 103 74.8
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 8.5e-35 150.2 101 73.3
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.1e-34 149.8 105 69.5
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.1e-34 149.8 105 69.5
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 1.1e-34 149.8 101 73.3
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 1.1e-34 149.8 103 73.8
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 1.1e-34 149.8 101 73.3
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 1.9e-34 149.1 92 80.4
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 2.5e-34 148.7 105 69.5
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 2.5e-34 148.7 105 69.5
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 3.2e-34 148.3 105 68.6
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 4.2e-34 147.9 100 72.0
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 2.7e-33 145.2 102 70.6
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 3.6e-33 144.8 88 80.7
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 3.6e-33 144.8 104 71.2
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 6.1e-33 144.1 103 71.8
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 1.0e-32 143.3 103 71.8
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 1.4e-32 142.9 100 71.0
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 1.4e-32 142.9 93 77.4
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 1.8e-32 142.5 95 75.8
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 4.0e-32 141.4 104 70.2
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 5.2e-32 141.0 98 70.4
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 6.8e-32 140.6 100 70.0
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 6.8e-32 140.6 92 75.0
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 1.2e-31 139.8 88 78.4
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 1.2e-31 139.8 88 78.4
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 2.0e-31 139.0 92 75.0
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.2e-30 135.6 73 86.3
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 5.4e-29 131.0 84 72.6
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 3.5e-28 128.3 73 80.8
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 7.7e-28 127.1 69 85.5
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 1.3e-27 126.3 96 66.7
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 2.5e-26 122.1 86 67.4
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 4.1e-21 104.8 70 68.6
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 3.5e-20 101.7 73 63.0
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.7e-19 99.4 69 63.8
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 1.1e-18 96.7 68 72.1
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 1.1e-18 96.7 68 72.1
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 1.9e-18 95.9 56 80.4
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 2.5e-18 95.5 78 55.1
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 3.6e-17 91.7 54 79.6
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 3.0e-16 88.6 70 55.7
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 4.0e-16 88.2 102 52.0
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 1.5e-15 86.3 55 65.5
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 2.6e-15 85.5 65 58.5
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 7.0e-13 77.4 102 48.0
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 8.9e-08 60.5 67 46.3


User provided reference genes

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