Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p040408 Quercus lobata HOM05D006361 ORTHO05D007824 1.4e-39 165.6 75 100.0
QL03p040440 Quercus lobata HOM05D006361 ORTHO05D007824 1.0e-13 79.7 43 86.0
QL03p040836 Quercus lobata HOM05D006361 ORTHO05D007824 1.0e-13 79.7 43 86.0
Gohir.D02G138700 Gossypium hirsutum HOM05D006361 ORTHO05D007824 7.5e-12 73.6 43 76.7
Gorai.005G155100 Gossypium raimondii HOM05D006361 ORTHO05D007824 7.5e-12 73.6 43 76.7
Cfa015091 Carpinus fangiana HOM05D006361 ORTHO05D007824 9.7e-12 73.2 43 79.1
Gohir.A03G114200 Gossypium hirsutum HOM05D006361 ORTHO05D007824 1.3e-11 72.8 43 74.4
Haze_10736 Corylus avellana HOM05D006361 ORTHO05D007824 1.7e-11 72.4 43 79.1
Manes.15G141000 Manihot esculenta HOM05D006361 ORTHO05D007824 3.7e-11 71.2 43 74.4
CiPaw.05G161000 Carya illinoinensis HOM05D006361 ORTHO05D007824 4.8e-11 70.9 43 72.1
COL.COLO4_27543 Corchorus olitorius HOM05D006361 ORTHO05D007824 8.3e-11 70.1 43 72.1
Duzib251G0777 Durio zibethinus HOM05D006361 ORTHO05D007824 8.3e-11 70.1 43 72.1
CsaV3_5G012340 Cucumis sativus L. HOM05D006361 ORTHO05D007824 1.4e-10 69.3 44 72.7
Sabra10G0072200 Salix brachista HOM05D006361 ORTHO05D007824 1.8e-10 68.9 43 74.4
Thecc.02G299900 Theobroma cacao HOM05D006361 ORTHO05D007824 1.8e-10 68.9 43 72.1
TWI74G1113 Tripterygium wilfordii HOM05D006361 ORTHO05D007824 1.8e-10 68.9 43 69.8
CSS0002219 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 3.1e-10 68.2 57 57.9
CSS0021447 Camellia sinensis var. sinensis HOM05D006361 ORTHO05D007824 3.1e-10 68.2 57 57.9
MELO3C022554.2 Cucumis melo HOM05D006361 ORTHO05D007824 7.0e-10 67.0 44 70.5
Ciclev10005401m.g Citrus clementina HOM05D006361 ORTHO05D007824 1.2e-09 66.2 43 69.8
Glyma.20G108700 Glycine max HOM05D006361 ORTHO05D007824 1.6e-09 65.9 43 72.1
Potri.010G099500 Populus trichocarpa HOM05D006361 ORTHO05D007824 1.6e-09 65.9 43 69.8
vmacro08586 Vaccinium macrocarpon HOM05D006361 ORTHO05D007824 2.0e-09 65.5 46 63.0
Cpa.g.sc2.83 Carica papaya HOM05D006361 ORTHO05D007824 2.7e-09 65.1 43 67.4
Lj6A727G89 Lonicera japonica HOM05D006361 ORTHO05D007824 2.7e-09 65.1 43 65.1
Rhsim04G0169300 Rhododendron simsii HOM05D006361 ORTHO05D007824 3.5e-09 64.7 43 65.1
THA.LOC104815221 Tarenaya hassleriana HOM05D006361 ORTHO05D007824 3.5e-09 64.7 43 69.8
PGR142G2205 Punica granatum HOM05D006361 ORTHO05D007824 4.5e-09 64.3 43 65.1
Cc11_g04970 Coffea canephora HOM05D006361 ORTHO05D007824 5.9e-09 63.9 45 62.2
Lalb_Chr02g0143351 Lupinus albus HOM05D006361 ORTHO05D007824 5.9e-09 63.9 43 69.8
ClCG11G000690 Citrullus lanatus HOM05D006361 ORTHO05D007824 7.7e-09 63.5 44 65.9
Eucgr.G02045 Eucalyptus grandis HOM05D006361 ORTHO05D007824 7.7e-09 63.5 43 65.1
Prupe.1G340600 Prunus persica HOM05D006361 ORTHO05D007824 7.7e-09 63.5 43 69.8
VMungo0720G0403 Vigna mungo HOM05D006361 ORTHO05D007824 7.7e-09 63.5 43 72.1
EL10Ac6g15395 Beta vulgaris HOM05D006361 ORTHO05D007824 1.7e-08 62.4 48 58.3
Hma1.2p1_0068F.1_g037170 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 1.7e-08 62.4 43 65.1
Hma1.2p1_0068F.1_g037190 Hydrangea macrophylla HOM05D006361 ORTHO05D007824 1.7e-08 62.4 43 65.1
Lj5g0003295 Lotus japonicus HOM05D006361 ORTHO05D007824 1.7e-08 62.4 43 69.8
arahy.Tifrunner.gnm1.ann1.D0LIF0 Arachis hypogaea HOM05D006361 ORTHO05D007824 2.2e-08 62.0 44 65.9
arahy.Tifrunner.gnm1.ann1.DP1KMD Arachis hypogaea HOM05D006361 ORTHO05D007824 2.2e-08 62.0 44 65.9
BcaB03g13282 Brassica carinata HOM05D006361 ORTHO05D007824 2.2e-08 62.0 43 65.1
DCAR_030322 Daucus carota HOM05D006361 ORTHO05D007824 2.2e-08 62.0 43 65.1
BcaC07g38489 Brassica carinata HOM05D006361 ORTHO05D007824 2.9e-08 61.6 43 65.1
C08p12590 Brassica napus HOM05D006361 ORTHO05D007824 2.9e-08 61.6 43 65.1
BolC8t48897H Brassica oleracea HOM05D006361 ORTHO05D007824 2.9e-08 61.6 43 65.1
BraA08t35382Z Brassica rapa HOM05D006361 ORTHO05D007824 2.9e-08 61.6 43 65.1
AUR62003478 Chenopodium quinoa HOM05D006361 ORTHO05D007824 2.9e-08 61.6 43 65.1
FAN12G2025 Fragaria x ananassa HOM05D006361 ORTHO05D007824 2.9e-08 61.6 43 69.8
arahy.Tifrunner.gnm1.ann1.L5ZJMR Arachis hypogaea HOM05D006361 ORTHO05D007824 3.8e-08 61.2 43 65.1
A08p34700 Brassica napus HOM05D006361 ORTHO05D007824 3.8e-08 61.2 43 65.1
Sp1g07900 Schrenkiella parvula HOM05D006361 ORTHO05D007824 3.8e-08 61.2 43 65.1
GSVIVG01000604001 Vitis vinifera HOM05D006361 ORTHO05D007824 3.8e-08 61.2 43 62.8
CARHR009260 Cardamine hirsuta HOM05D006361 ORTHO05D007824 6.5e-08 60.5 43 62.8
Ca_11202_v3 Cicer arietinum L. HOM05D006361 ORTHO05D007824 6.5e-08 60.5 43 67.4
Phvul.007G020000 Phaseolus vulgaris HOM05D006361 ORTHO05D007824 6.5e-08 60.5 44 65.9
Sed0017139 Sechium edule HOM05D006361 ORTHO05D007824 6.5e-08 60.5 44 61.4
TPR.G2489 Trifolium pratense HOM05D006361 ORTHO05D007824 6.5e-08 60.5 43 67.4
AT1G09290 Arabidopsis thaliana HOM05D006361 ORTHO05D007824 8.5e-08 60.1 43 62.8
Carub.0001s0863 Capsella rubella HOM05D006361 ORTHO05D007824 8.5e-08 60.1 43 62.8
Aa31LG1G5840 Aethionema arabicum HOM05D006361 ORTHO05D007824 1.1e-07 59.7 43 65.1
Thhalv10008047m.g Eutrema salsugineum HOM05D006361 ORTHO05D007824 1.1e-07 59.7 43 62.8
FvH4_4g35990 Fragaria vesca HOM05D006361 ORTHO05D007824 1.5e-07 59.3 43 67.4
FAN07G0576 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.5e-07 59.3 43 67.4
FAN22G0651 Fragaria x ananassa HOM05D006361 ORTHO05D007824 1.5e-07 59.3 43 67.4
Psat6g231640 Pisum sativum HOM05D006361 ORTHO05D007824 1.5e-07 59.3 44 63.6
Medtr1g112360 Medicago truncatula HOM05D006361 ORTHO05D007824 1.9e-07 58.9 43 65.1
RcHm_v2.0_Chr4g0445621 Rosa chinensis HOM05D006361 ORTHO05D007824 1.9e-07 58.9 43 67.4
TAR371G0655 Trochodendron aralioides HOM05D006361 ORTHO05D007824 2.5e-07 58.5 43 58.1
MD16G1010000 Malus domestica HOM05D006361 ORTHO05D007824 4.2e-07 57.8 43 65.1
Nn4g24771 Nelumbo nucifera HOM05D006361 ORTHO05D007824 5.5e-07 57.4 43 62.8
Sc11g0003580 Simmondsia chinensis HOM05D006361 ORTHO05D007824 5.5e-07 57.4 45 57.8
Aqoxy3G04165 Aquilegia oxysepala HOM05D006361 ORTHO05D007824 7.2e-07 57.0 44 59.1
FAN17G1000 Fragaria x ananassa HOM05D006361 ORTHO05D007824 7.2e-07 57.0 43 65.1
PSO063G1793 Papaver somniferum HOM05D006361 ORTHO05D007824 9.4e-07 56.6 43 62.8
AL1G19780 Arabidopsis lyrata HOM05D006361 ORTHO05D007824 1.2e-06 56.2 43 58.1
Peaxi162Scf00705g00017 Petunia axillaris HOM05D006361 ORTHO05D007824 1.6e-06 55.8 43 55.8
PSO782G3204 Papaver somniferum HOM05D006361 ORTHO05D007824 2.1e-06 55.5 43 60.5
Oeu005683.1 Olea europaea HOM05D006361 ORTHO05D007824 3.6e-06 54.7 43 51.2
HanXRQChr08g0224371 Helianthus annuus HOM05D006361 ORTHO05D007824 4.7e-06 54.3 43 55.8


User provided reference genes

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