Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p039924 Quercus lobata HOM05D001444 ORTHO05D003766 1.4e-104 382.9 187 100.0
QL03p013575 Quercus lobata HOM05D001444 ORTHO05D003766 7.9e-71 270.8 181 80.7
QL03p013604 Quercus lobata HOM05D001444 ORTHO05D003766 6.8e-46 188.0 135 75.6
MD12G1206100 Malus domestica HOM05D001444 ORTHO05D003766 7.2e-40 167.9 158 59.5
Prupe.2G038600 Prunus persica HOM05D001444 ORTHO05D003766 9.5e-40 167.5 158 60.1
Prupe.6G313300 Prunus persica HOM05D001444 ORTHO05D003766 2.1e-39 166.4 158 59.5
FvH4_6g07420 Fragaria vesca HOM05D001444 ORTHO05D003766 3.6e-39 165.6 158 59.5
FAN02G3316 Fragaria x ananassa HOM05D001444 ORTHO05D003766 3.6e-39 165.6 158 59.5
QL03p013621 Quercus lobata HOM05D001444 ORTHO05D003766 3.6e-39 165.6 197 52.8
FAN14G2853 Fragaria x ananassa HOM05D001444 ORTHO05D003766 8.0e-39 164.5 158 58.9
MD04G1193200 Malus domestica HOM05D001444 ORTHO05D003766 8.0e-39 164.5 158 58.9
QL03p039871 Quercus lobata HOM05D001444 ORTHO05D003766 8.0e-39 164.5 158 59.5
FAN05G3889 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.0e-38 164.1 158 58.9
FAN09G2106 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.0e-38 164.1 158 59.5
Sed0006327 Sechium edule HOM05D001444 ORTHO05D003766 1.8e-38 163.3 158 59.5
MD02G1284000 Malus domestica HOM05D001444 ORTHO05D003766 3.0e-38 162.5 158 58.2
TWI56G1076 Tripterygium wilfordii HOM05D001444 ORTHO05D003766 3.0e-38 162.5 158 57.6
Cpa.g.sc48.159 Carica papaya HOM05D001444 ORTHO05D003766 5.2e-38 161.8 158 58.2
Potri.005G017600 Populus trichocarpa HOM05D001444 ORTHO05D003766 5.2e-38 161.8 158 57.6
CANSAT54G1984 Cannabis sativa HOM05D001444 ORTHO05D003766 8.9e-38 161.0 158 57.0
DCAR_017356 Daucus carota HOM05D001444 ORTHO05D003766 8.9e-38 161.0 158 57.0
CiPaw.07G029500 Carya illinoinensis HOM05D001444 ORTHO05D003766 1.2e-37 160.6 158 57.0
ClCG00G002460 Citrullus lanatus HOM05D001444 ORTHO05D003766 1.2e-37 160.6 158 58.2
ClCG02G014960 Citrullus lanatus HOM05D001444 ORTHO05D003766 1.2e-37 160.6 158 58.2
vmacro19754 Vaccinium macrocarpon HOM05D001444 ORTHO05D003766 1.2e-37 160.6 158 57.0
Actinidia01682 Actinidia chinensis HOM05D001444 ORTHO05D003766 1.5e-37 160.2 158 57.6
Manes.08G111500 Manihot esculenta HOM05D001444 ORTHO05D003766 1.5e-37 160.2 158 57.0
CSS0031861 Camellia sinensis var. sinensis HOM05D001444 ORTHO05D003766 2.0e-37 159.8 158 57.6
Potri.013G008900 Populus trichocarpa HOM05D001444 ORTHO05D003766 2.0e-37 159.8 158 57.6
Sabra13G0007500 Salix brachista HOM05D001444 ORTHO05D003766 2.0e-37 159.8 158 57.6
Gohir.A11G273200 Gossypium hirsutum HOM05D001444 ORTHO05D003766 2.6e-37 159.5 156 57.7
CsaV3_2G007040 Cucumis sativus L. HOM05D001444 ORTHO05D003766 4.4e-37 158.7 158 57.6
GSVIVG01031236001 Vitis vinifera HOM05D001444 ORTHO05D003766 4.4e-37 158.7 158 57.0
arahy.Tifrunner.gnm1.ann1.06RU3W Arachis hypogaea HOM05D001444 ORTHO05D003766 7.5e-37 157.9 158 55.7
arahy.Tifrunner.gnm1.ann1.UJ98VB Arachis hypogaea HOM05D001444 ORTHO05D003766 7.5e-37 157.9 158 55.7
Gohir.D08G222800 Gossypium hirsutum HOM05D001444 ORTHO05D003766 7.5e-37 157.9 156 57.1
Gorai.004G236600 Gossypium raimondii HOM05D001444 ORTHO05D003766 7.5e-37 157.9 156 57.1
Gohir.A08G205900 Gossypium hirsutum HOM05D001444 ORTHO05D003766 9.8e-37 157.5 156 57.1
CDE11G0937 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 2.2e-36 156.4 158 55.1
Gohir.D11G283300 Gossypium hirsutum HOM05D001444 ORTHO05D003766 2.2e-36 156.4 156 57.1
Gorai.007G306200 Gossypium raimondii HOM05D001444 ORTHO05D003766 2.2e-36 156.4 156 57.1
HanXRQChr16g0513821 Helianthus annuus HOM05D001444 ORTHO05D003766 2.2e-36 156.4 155 56.8
RcHm_v2.0_Chr3g0457021 Rosa chinensis HOM05D001444 ORTHO05D003766 2.9e-36 156.0 158 57.0
TAR636G1039 Trochodendron aralioides HOM05D001444 ORTHO05D003766 2.9e-36 156.0 158 55.7
Duzib106G0804 Durio zibethinus HOM05D001444 ORTHO05D003766 4.9e-36 155.2 164 53.7
Hma1.2p1_0008F-1.1_g005610 Hydrangea macrophylla HOM05D001444 ORTHO05D003766 4.9e-36 155.2 158 56.3
Nn4g25600 Nelumbo nucifera HOM05D001444 ORTHO05D003766 6.4e-36 154.8 158 55.1
Thecc.05G322700 Theobroma cacao HOM05D001444 ORTHO05D003766 6.4e-36 154.8 156 55.8
Duzib177G0746 Durio zibethinus HOM05D001444 ORTHO05D003766 8.3e-36 154.5 156 55.8
FAN03G3407 Fragaria x ananassa HOM05D001444 ORTHO05D003766 8.3e-36 154.5 158 55.1
Lalb_Chr21g0310321 Lupinus albus HOM05D001444 ORTHO05D003766 8.3e-36 154.5 158 55.1
TAR633G2402 Trochodendron aralioides HOM05D001444 ORTHO05D003766 8.3e-36 154.5 157 56.1
Cc02_g35000 Coffea canephora HOM05D001444 ORTHO05D003766 1.4e-35 153.7 158 54.4
Solyc10g024320.2 Solanum lycopersicum HOM05D001444 ORTHO05D003766 1.8e-35 153.3 161 54.7
Nn3g21688 Nelumbo nucifera HOM05D001444 ORTHO05D003766 2.4e-35 152.9 158 55.1
Lalb_Chr02g0147821 Lupinus albus HOM05D001444 ORTHO05D003766 3.2e-35 152.5 158 55.1
Aqoxy7G03321 Aquilegia oxysepala HOM05D001444 ORTHO05D003766 4.1e-35 152.1 156 55.8
FvH4_7g03300 Fragaria vesca HOM05D001444 ORTHO05D003766 5.4e-35 151.8 157 54.8
PGR083G0370 Punica granatum HOM05D001444 ORTHO05D003766 5.4e-35 151.8 158 55.1
Cfa006700 Carpinus fangiana HOM05D001444 ORTHO05D003766 9.2e-35 151.0 158 55.1
Ciclev10000120m.g Citrus clementina HOM05D001444 ORTHO05D003766 9.2e-35 151.0 154 56.5
Glyma.10G147200 Glycine max HOM05D001444 ORTHO05D003766 1.2e-34 150.6 158 55.7
Ca_10170_v3 Cicer arietinum L. HOM05D001444 ORTHO05D003766 1.6e-34 150.2 158 54.4
Glyma.20G097700 Glycine max HOM05D001444 ORTHO05D003766 1.6e-34 150.2 158 55.7
Medtr1g084020 Medicago truncatula HOM05D001444 ORTHO05D003766 1.6e-34 150.2 158 54.4
Sopen10g009280 Solanum pennellii HOM05D001444 ORTHO05D003766 1.6e-34 150.2 161 54.0
VMungo0720G2265 Vigna mungo HOM05D001444 ORTHO05D003766 1.6e-34 150.2 158 55.1
BcaNung03668 Brassica carinata HOM05D001444 ORTHO05D003766 2.0e-34 149.8 156 55.1
A06p37080 Brassica napus HOM05D001444 ORTHO05D003766 2.0e-34 149.8 156 55.1
C07p41360 Brassica napus HOM05D001444 ORTHO05D003766 2.0e-34 149.8 156 55.1
TAR365G0568 Trochodendron aralioides HOM05D001444 ORTHO05D003766 2.0e-34 149.8 158 51.3
BcaNung03919 Brassica carinata HOM05D001444 ORTHO05D003766 2.7e-34 149.4 157 54.8
Carub.0006s2452 Capsella rubella HOM05D001444 ORTHO05D003766 3.5e-34 149.1 156 54.5
RcHm_v2.0_Chr1g0325611 Rosa chinensis HOM05D001444 ORTHO05D003766 3.5e-34 149.1 153 54.9
SHI18059 Sapria himalayana HOM05D001444 ORTHO05D003766 3.5e-34 149.1 158 53.2
ATR0796G182 Amborella trichopoda HOM05D001444 ORTHO05D003766 4.6e-34 148.7 158 53.8
FAN10G3276 Fragaria x ananassa HOM05D001444 ORTHO05D003766 4.6e-34 148.7 158 53.8
Dinv30892 Davidia involucrata HOM05D001444 ORTHO05D003766 5.9e-34 148.3 158 55.1
Thhalv10003617m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 5.9e-34 148.3 156 53.8
Phvul.007G201200 Phaseolus vulgaris HOM05D001444 ORTHO05D003766 5.9e-34 148.3 156 55.8
Psat0s3400g0080 Pisum sativum HOM05D001444 ORTHO05D003766 5.9e-34 148.3 158 53.2
TPR.G2620 Trifolium pratense HOM05D001444 ORTHO05D003766 5.9e-34 148.3 158 53.8
Zm00001eb331350 Zea mays HOM05D001444 ORTHO05D003766 5.9e-34 148.3 161 52.8
A02p38980 Brassica napus HOM05D001444 ORTHO05D003766 7.8e-34 147.9 156 54.5
C02p58570 Brassica napus HOM05D001444 ORTHO05D003766 7.8e-34 147.9 156 54.5
BolC2t11917H Brassica oleracea HOM05D001444 ORTHO05D003766 7.8e-34 147.9 156 54.5
CARHR186670 Cardamine hirsuta HOM05D001444 ORTHO05D003766 7.8e-34 147.9 156 53.8
Duzib128G0547 Durio zibethinus HOM05D001444 ORTHO05D003766 1.0e-33 147.5 156 54.5
BraA02t08868Z Brassica rapa HOM05D001444 ORTHO05D003766 1.3e-33 147.1 156 54.5
AT5G26860 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 1.7e-33 146.7 156 53.2
Lsat_1_v5_gn_5_103920 Lactuca sativa HOM05D001444 ORTHO05D003766 1.7e-33 146.7 155 53.5
FAN06G0007 Fragaria x ananassa HOM05D001444 ORTHO05D003766 2.3e-33 146.4 160 53.8
BcaC03g17826 Brassica carinata HOM05D001444 ORTHO05D003766 3.0e-33 146.0 156 53.8
Rhsim05G0131900 Rhododendron simsii HOM05D001444 ORTHO05D003766 3.0e-33 146.0 181 49.7
Sp2g21140 Schrenkiella parvula HOM05D001444 ORTHO05D003766 3.0e-33 146.0 156 53.8
AL6G38730 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 3.9e-33 145.6 156 53.8
Sc06g0005760 Simmondsia chinensis HOM05D001444 ORTHO05D003766 3.9e-33 145.6 149 55.0
BolC7t44666H Brassica oleracea HOM05D001444 ORTHO05D003766 5.0e-33 145.2 157 54.8
BraA06t26633Z Brassica rapa HOM05D001444 ORTHO05D003766 5.0e-33 145.2 157 54.8
Zm00001eb111810 Zea mays HOM05D001444 ORTHO05D003766 6.6e-33 144.8 161 52.2
Aa31LG11G9790 Aethionema arabicum HOM05D001444 ORTHO05D003766 8.6e-33 144.4 158 51.9
MSTRG.27942 Avicennia marina HOM05D001444 ORTHO05D003766 8.6e-33 144.4 151 53.0
SalBow2G0724 Salvia bowleyana HOM05D001444 ORTHO05D003766 1.5e-32 143.7 151 55.0
Migut.N01380 Erythranthe guttata HOM05D001444 ORTHO05D003766 1.9e-32 143.3 151 53.0
Lj5g0020416 Lotus japonicus HOM05D001444 ORTHO05D003766 1.9e-32 143.3 158 52.5
COL.COLO4_05554 Corchorus olitorius HOM05D001444 ORTHO05D003766 2.5e-32 142.9 166 53.0
Thhalv10022093m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 3.3e-32 142.5 158 50.6
Eucgr.L00266 Eucalyptus grandis HOM05D001444 ORTHO05D003766 4.3e-32 142.1 156 53.2
Oeu053708.1 Olea europaea HOM05D001444 ORTHO05D003766 4.3e-32 142.1 152 54.6
PSO063G2884 Papaver somniferum HOM05D001444 ORTHO05D003766 4.3e-32 142.1 156 51.9
PSO782G1742 Papaver somniferum HOM05D001444 ORTHO05D003766 5.6e-32 141.7 156 51.3
unitig_26.g9563 Utricularia gibba HOM05D001444 ORTHO05D003766 5.6e-32 141.7 149 53.7
SGA_v2.0_scaffold37G14611 Striga asiatica HOM05D001444 ORTHO05D003766 1.6e-31 140.2 151 52.3
Carub.0003s0515 Capsella rubella HOM05D001444 ORTHO05D003766 2.8e-31 139.4 167 48.5
AL3G16530 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 6.2e-31 138.3 156 50.6
HPP92_027566 Vanilla planifolia HOM05D001444 ORTHO05D003766 8.0e-31 137.9 158 50.6
ECA234G1965 Erigeron canadensis HOM05D001444 ORTHO05D003766 1.0e-30 137.5 155 52.3
Dinv24440 Davidia involucrata HOM05D001444 ORTHO05D003766 3.1e-30 136.0 163 50.3
Lj5A334G51 Lonicera japonica HOM05D001444 ORTHO05D003766 4.0e-30 135.6 159 50.3
AT3G05790 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 8.9e-30 134.4 158 49.4
DCAR_005419 Daucus carota HOM05D001444 ORTHO05D003766 3.7e-28 129.0 137 55.5
Haze_04062 Corylus avellana HOM05D001444 ORTHO05D003766 4.9e-28 128.6 139 51.8
CAN.G2431.1 Capsicum annuum HOM05D001444 ORTHO05D003766 1.9e-27 126.7 161 47.2
Nitab4.5_0003894g0030 Nicotiana tabacum HOM05D001444 ORTHO05D003766 1.9e-27 126.7 142 50.7
BolC1t05667H Brassica oleracea HOM05D001444 ORTHO05D003766 4.1e-27 125.6 160 45.6
MELO3C004189.2 Cucumis melo HOM05D001444 ORTHO05D003766 5.4e-27 125.2 136 55.1
AUR62006755 Chenopodium quinoa HOM05D001444 ORTHO05D003766 1.2e-26 124.0 132 52.3
CARHR080240 Cardamine hirsuta HOM05D001444 ORTHO05D003766 1.6e-26 123.6 179 43.0
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 1.6e-26 123.6 136 53.7
AL3G16520 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 2.0e-26 123.2 177 44.1
AT3G05780 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 2.0e-26 123.2 166 45.2
AUR62000399 Chenopodium quinoa HOM05D001444 ORTHO05D003766 2.0e-26 123.2 132 52.3
BraA01t04474Z Brassica rapa HOM05D001444 ORTHO05D003766 4.6e-26 122.1 161 44.1
AL845U10010 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 1.7e-25 120.2 165 44.8
EL10Ac4g09446 Beta vulgaris HOM05D001444 ORTHO05D003766 2.3e-25 119.8 132 53.0
A06p02720 Brassica napus HOM05D001444 ORTHO05D003766 1.1e-24 117.5 186 42.5
BraA06t23480Z Brassica rapa HOM05D001444 ORTHO05D003766 1.5e-24 117.1 185 42.7
A06p02730 Brassica napus HOM05D001444 ORTHO05D003766 1.9e-24 116.7 126 50.8
Ah.03g134540 Amaranthus hybridus HOM05D001444 ORTHO05D003766 5.6e-24 115.2 123 52.8
BcaC09g47850 Brassica carinata HOM05D001444 ORTHO05D003766 5.6e-24 115.2 147 45.6
Zm00001eb014570 Zea mays HOM05D001444 ORTHO05D003766 7.3e-24 114.8 149 49.0
MD07G1050000 Malus domestica HOM05D001444 ORTHO05D003766 3.6e-23 112.5 158 46.2
BcaC08g43275 Brassica carinata HOM05D001444 ORTHO05D003766 6.2e-23 111.7 185 41.6
C06p06260 Brassica napus HOM05D001444 ORTHO05D003766 6.2e-23 111.7 185 41.6
BolC6t35735H Brassica oleracea HOM05D001444 ORTHO05D003766 6.2e-23 111.7 185 41.6
BolC6t35734H Brassica oleracea HOM05D001444 ORTHO05D003766 9.8e-21 104.4 138 44.9
THA.LOC104820100 Tarenaya hassleriana HOM05D001444 ORTHO05D003766 1.3e-20 104.0 256 32.8
C06p06230 Brassica napus HOM05D001444 ORTHO05D003766 2.1e-18 96.7 129 45.0
BcaB07g33548 Brassica carinata HOM05D001444 ORTHO05D003766 6.0e-18 95.1 137 42.3
Oeu064819.1 Olea europaea HOM05D001444 ORTHO05D003766 1.3e-17 94.0 130 43.8
SMO358G0399 Selaginella moellendorffii HOM05D001444 ORTHO05D003766 2.3e-17 93.2 170 37.6
Peaxi162Scf01208g00007 Petunia axillaris HOM05D001444 ORTHO05D003766 3.0e-17 92.8 120 45.8
AagrBONN_evm.TU.Sc2ySwM_228.1077 Anthoceros agrestis HOM05D001444 ORTHO05D003766 2.8e-15 86.3 172 34.9
Pp3c13_13900 Physcomitrium patens HOM05D001444 ORTHO05D003766 6.2e-15 85.1 171 33.9
BcaC08g43276 Brassica carinata HOM05D001444 ORTHO05D003766 2.3e-14 83.2 120 44.2
Actinidia01509 Actinidia chinensis HOM05D001444 ORTHO05D003766 3.1e-14 82.8 59 64.4
C08p03360 Brassica napus HOM05D001444 ORTHO05D014980 3.1e-14 82.8 76 61.8
BolC8t47133H Brassica oleracea HOM05D001444 ORTHO05D014980 3.1e-14 82.8 76 61.8
C06p06270 Brassica napus HOM05D001444 ORTHO05D003766 6.8e-14 81.6 121 43.0
C05p14480 Brassica napus HOM05D001444 ORTHO05D014980 1.5e-13 80.5 76 60.5
C09p35940 Brassica napus HOM05D001444 ORTHO05D014980 1.5e-13 80.5 76 60.5
BolC9t56426H Brassica oleracea HOM05D001444 ORTHO05D014980 1.5e-13 80.5 76 60.5
BcaB07g33551 Brassica carinata HOM05D001444 ORTHO05D003766 3.4e-13 79.3 156 37.8
SEGI_11007 Sequoiadendron giganteum HOM05D001444 ORTHO05D003766 3.4e-13 79.3 104 46.2
EL10Ac1g02045 Beta vulgaris HOM05D000232 ORTHO05D000145 5.8e-13 78.6 105 45.7
C05p39200 Brassica napus HOM05D001444 ORTHO05D014980 3.7e-12 75.9 71 60.6
BolC5t32653H Brassica oleracea HOM05D001444 ORTHO05D014980 3.7e-12 75.9 71 60.6
BcaC04g21082 Brassica carinata HOM05D001444 ORTHO05D014980 3.5e-10 69.3 68 57.4
BcaC05g27912 Brassica carinata HOM05D001444 ORTHO05D003766 1.3e-09 67.4 63 58.7
CBR_g37235 Chara braunii HOM05D001444 ORTHO05D003766 1.1e-08 64.3 149 33.6
BolC9t58100H Brassica oleracea HOM05D001444 ORTHO05D014980 1.9e-08 63.5 77 53.2
HPP92_017244 Vanilla planifolia HOM05D001444 ORTHO05D003766 3.3e-08 62.8 51 66.7
Cfa024900 Carpinus fangiana HOM05D001444 ORTHO05D003766 9.6e-08 61.2 58 44.8
C09p52310 Brassica napus HOM05D001444 ORTHO05D014980 4.7e-07 58.9 72 52.8
Mapoly1100s0003 Marchantia polymorpha HOM05D001444 ORTHO05D031226 1.1e-06 57.8 67 46.3
Atru.chr2.183 Acer truncatum HOM05D001444 ORTHO05D003766 5.2e-06 55.5 122 34.4


User provided reference genes

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