Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 3.4e-123 445.3 235 100.0
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 3.0e-119 432.2 254 92.1
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 1.1e-94 350.5 229 76.9
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.9e-94 349.7 232 78.4
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 7.3e-94 347.8 230 76.1
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 2.0e-91 339.7 230 75.2
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 7.6e-91 337.8 234 72.6
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 3.8e-90 335.5 240 74.2
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.9e-89 333.2 222 76.6
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 2.1e-88 329.7 232 72.4
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 3.5e-88 328.9 242 68.2
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 3.5e-88 328.9 242 68.2
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.3e-87 327.0 229 70.3
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 3.0e-87 325.9 244 68.0
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 4.3e-86 322.0 229 72.1
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 5.6e-86 321.6 226 75.2
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 5.6e-86 321.6 244 67.6
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 7.3e-86 321.2 245 67.3
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 2.1e-85 319.7 248 64.9
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 1.1e-84 317.4 232 70.7
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 1.4e-84 317.0 205 76.6
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 2.4e-84 316.2 245 67.8
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 4.0e-84 315.5 232 71.1
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 5.3e-84 315.1 245 66.5
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.2e-83 313.9 206 74.8
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 2.6e-83 312.8 221 74.2
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 2.6e-83 312.8 230 70.9
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 8.4e-82 307.8 237 67.5
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 7.1e-81 304.7 233 65.7
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 4.6e-80 302.0 210 75.7
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 4.6e-80 302.0 233 67.4
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 6.0e-80 301.6 223 69.5
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 6.0e-80 301.6 226 68.1
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 7.9e-80 301.2 210 72.9
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 1.8e-79 300.1 202 74.3
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 3.9e-79 298.9 232 70.7
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 5.1e-79 298.5 218 64.7
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 6.7e-79 298.1 224 66.5
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 6.7e-79 298.1 226 65.0
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.1e-78 297.4 232 67.2
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.5e-78 297.0 228 67.1
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 2.5e-78 296.2 234 66.7
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 3.3e-78 295.8 210 71.4
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 3.3e-78 295.8 226 72.1
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 9.6e-78 294.3 230 67.8
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.1e-77 293.1 222 71.2
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 2.1e-77 293.1 216 68.5
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 3.7e-77 292.4 205 75.6
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 6.2e-77 291.6 234 70.5
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 6.2e-77 291.6 230 68.3
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 6.2e-77 291.6 233 69.1
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.8e-76 290.0 226 66.4
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 4.0e-76 288.9 232 66.4
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 5.3e-76 288.5 206 72.3
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 9.0e-76 287.7 208 70.7
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 2.0e-75 286.6 216 70.8
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 2.0e-75 286.6 230 62.2
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 5.8e-75 285.0 233 63.5
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 3.8e-74 282.3 208 69.2
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.9e-73 280.0 217 69.6
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 2.5e-73 279.6 231 63.6
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 4.2e-73 278.9 212 69.3
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 5.5e-73 278.5 217 65.0
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 5.5e-73 278.5 224 69.2
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 7.1e-73 278.1 201 66.7
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 9.3e-73 277.7 221 68.3
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.2e-72 277.3 230 62.2
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.3e-71 273.1 212 69.8
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 2.3e-71 273.1 203 69.0
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 3.3e-70 269.2 231 62.3
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 3.3e-70 269.2 205 63.9
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 1.6e-69 266.9 221 69.2
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.8e-69 265.4 223 65.5
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.8e-69 265.4 223 65.5
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 6.2e-69 265.0 232 60.3
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.4e-68 263.8 191 67.5
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 1.8e-68 263.5 226 65.9
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 1.8e-68 263.5 209 69.9
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 2.4e-68 263.1 212 66.0
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.4e-68 263.1 229 63.3
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 2.4e-68 263.1 232 60.8
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 6.9e-68 261.5 223 65.0
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 6.9e-68 261.5 223 65.0
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 1.5e-67 260.4 236 55.5
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.9e-66 256.1 187 72.2
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 8.4e-66 254.6 230 61.3
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.4e-65 253.8 230 60.4
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 2.5e-65 253.1 230 60.9
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 5.5e-65 251.9 231 61.0
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 7.1e-65 251.5 189 63.5
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 9.3e-65 251.1 229 61.1
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 9.3e-65 251.1 229 61.1
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 3.5e-64 249.2 230 59.6
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 4.6e-64 248.8 240 56.2
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.0e-63 247.7 204 61.8
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 5.1e-63 245.4 214 65.4
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.1e-62 244.2 255 54.9
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 1.9e-62 243.4 237 57.4
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.5e-62 243.0 255 55.3
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 4.3e-62 242.3 209 62.2
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 9.7e-62 241.1 230 58.7
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.3e-61 240.7 221 60.2
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 3.7e-61 239.2 185 62.7
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 8.2e-61 238.0 199 63.8
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.1e-60 237.7 201 65.7
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.8e-60 236.9 243 57.2
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 4.1e-60 235.7 254 54.7
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 9.0e-60 234.6 221 59.7
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.2e-59 234.2 187 62.0
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.5e-59 233.8 231 57.1
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.3e-58 230.7 238 58.0
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.3e-58 230.7 238 58.0
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 2.9e-58 229.6 237 57.8
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 2.5e-57 226.5 191 58.1
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 3.2e-57 226.1 244 54.5
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 3.2e-57 226.1 226 58.0
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 5.5e-57 225.3 210 58.6
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 5.5e-57 225.3 210 58.6
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 5.5e-57 225.3 210 58.6
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 9.4e-57 224.6 210 58.6
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 8.8e-55 218.0 157 70.7
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 3.3e-54 216.1 207 55.6
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.7e-53 213.8 194 57.7
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 1.7e-53 213.8 180 56.1
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.2e-53 213.4 200 56.5
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.7e-53 212.6 200 56.5
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 6.3e-53 211.8 150 70.7
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 8.2e-53 211.5 177 67.8
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 2.4e-52 209.9 209 55.0
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 3.1e-52 209.5 205 54.1
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.3e-50 204.1 210 58.1
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 9.4e-49 198.0 197 54.3
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 1.8e-47 193.7 151 71.5
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 6.7e-47 191.8 181 56.9
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 5.7e-46 188.7 203 50.7
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 5.7e-46 188.7 203 50.7
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 9.7e-46 188.0 199 49.7
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 9.1e-44 181.4 206 47.6
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.7e-42 177.2 202 46.0
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 3.8e-42 176.0 202 45.5
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 5.0e-42 175.6 206 48.5
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 5.0e-42 175.6 226 47.3
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 6.5e-42 175.3 206 45.6
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 1.1e-41 174.5 143 65.7
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.1e-41 174.5 236 43.2
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 2.5e-41 173.3 179 58.7
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 3.2e-41 172.9 205 48.3
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 7.2e-41 171.8 193 46.1
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 8.0e-40 168.3 194 50.5
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.9e-39 166.0 199 45.2
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 4.8e-37 159.1 156 52.6
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 6.3e-37 158.7 182 43.4
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.4e-36 157.5 179 43.6
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.4e-36 157.5 215 39.5
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 6.5e-34 148.7 128 66.4
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 6.1e-32 142.1 132 59.1
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.0e-31 141.4 197 40.1
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 3.5e-27 126.3 158 43.0
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 6.5e-26 122.1 158 41.8
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 1.9e-25 120.6 204 38.7
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 4.7e-24 115.9 160 48.8
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 1.4e-23 114.4 90 76.7
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 7.7e-19 98.6 78 65.4
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 1.7e-18 97.4 97 52.6
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 2.8e-16 90.1 159 36.5
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.0e-14 84.0 69 65.2
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 9.8e-14 81.6 63 61.9
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 1.3e-13 81.3 65 64.6
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 7.3e-09 65.5 41 70.7
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 1.6e-08 64.3 213 23.5
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 6.8e-07 58.9 215 24.2


User provided reference genes

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