Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p039637 Quercus lobata HOM05D003290 ORTHO05D003866 3.6e-72 275.0 159 100.0
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 4.8e-16 88.6 99 51.5
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 4.8e-16 88.6 87 57.5
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 8.1e-16 87.8 87 57.5
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 1.8e-15 86.7 87 56.3
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 3.1e-15 85.9 87 56.3
Ciclev10018329m.g Citrus clementina HOM05D003290 ORTHO05D003866 5.3e-15 85.1 83 56.6
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 5.3e-15 85.1 83 60.2
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 9.0e-15 84.3 85 56.5
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 9.0e-15 84.3 83 56.6
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 1.2e-14 84.0 83 55.4
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 1.5e-14 83.6 89 51.7
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 1.5e-14 83.6 96 53.1
Oeu005357.1 Olea europaea HOM05D003290 ORTHO05D003866 1.5e-14 83.6 83 55.4
Cc11_g05280 Coffea canephora HOM05D003290 ORTHO05D003866 3.4e-14 82.4 83 54.2
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 3.4e-14 82.4 89 51.7
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 7.6e-14 81.3 50 84.0
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 9.9e-14 80.9 44 88.6
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 9.9e-14 80.9 44 88.6
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 9.9e-14 80.9 44 88.6
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 9.9e-14 80.9 50 74.0
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 9.9e-14 80.9 48 81.2
vmacro10755 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 9.9e-14 80.9 58 74.1
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 1.3e-13 80.5 83 55.4
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 1.3e-13 80.5 83 53.0
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 1.3e-13 80.5 50 80.0
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 1.7e-13 80.1 82 54.9
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 2.2e-13 79.7 44 88.6
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 2.2e-13 79.7 48 81.2
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 2.2e-13 79.7 83 55.4
Dinv02702 Davidia involucrata HOM05D003290 ORTHO05D003866 2.2e-13 79.7 81 54.3
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 2.2e-13 79.7 83 53.0
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 2.9e-13 79.3 44 84.1
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 2.9e-13 79.3 89 48.3
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 2.9e-13 79.3 89 47.2
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 2.9e-13 79.3 83 54.2
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 2.9e-13 79.3 49 77.6
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 2.9e-13 79.3 83 51.8
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 3.8e-13 79.0 83 53.0
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 3.8e-13 79.0 50 80.0
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 3.8e-13 79.0 83 53.0
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 3.8e-13 79.0 83 51.8
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 4.9e-13 78.6 50 76.0
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 4.9e-13 78.6 85 49.4
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 4.9e-13 78.6 83 53.0
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 4.9e-13 78.6 48 77.1
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 6.4e-13 78.2 44 77.3
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 6.4e-13 78.2 89 50.6
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 8.4e-13 77.8 81 53.1
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 8.4e-13 77.8 109 45.0
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 8.4e-13 77.8 87 49.4
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 8.4e-13 77.8 89 48.3
CiPaw.05G160000 Carya illinoinensis HOM05D003290 ORTHO05D003866 1.1e-12 77.4 83 53.0
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 1.1e-12 77.4 50 76.0
Nitab4.5_0001529g0050 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.1e-12 77.4 94 45.7
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 1.4e-12 77.0 44 86.4
FvH4_4g35890 Fragaria vesca HOM05D003290 ORTHO05D003866 1.4e-12 77.0 44 81.8
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.4e-12 77.0 101 46.5
DCAR_030316 Daucus carota HOM05D003290 ORTHO05D003866 1.9e-12 76.6 83 54.2
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 1.9e-12 76.6 49 77.6
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.9e-12 76.6 101 46.5
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 1.9e-12 76.6 101 46.5
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 1.9e-12 76.6 85 48.2
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 1.9e-12 76.6 83 50.6
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 1.9e-12 76.6 43 90.7
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.9e-12 76.6 55 65.5
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.9e-12 76.6 46 80.4
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 2.4e-12 76.3 44 84.1
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 2.4e-12 76.3 44 84.1
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 2.4e-12 76.3 44 84.1
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 2.4e-12 76.3 44 84.1
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 2.4e-12 76.3 44 84.1
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 2.4e-12 76.3 44 84.1
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 2.4e-12 76.3 44 81.8
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 2.4e-12 76.3 44 81.8
FAN22G1869 Fragaria x ananassa HOM05D003290 ORTHO05D003866 2.4e-12 76.3 44 81.8
Hma1.2p1_0197F.1_g085160 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 2.4e-12 76.3 44 86.4
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 3.2e-12 75.9 83 50.6
Sc03g0005950 Simmondsia chinensis HOM05D003290 ORTHO05D003866 3.2e-12 75.9 44 81.8
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 4.2e-12 75.5 84 50.0
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 4.2e-12 75.5 83 49.4
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 4.2e-12 75.5 83 49.4
MD13G1014200 Malus domestica HOM05D003290 ORTHO05D003866 5.4e-12 75.1 71 59.2
MD16G1011500 Malus domestica HOM05D003290 ORTHO05D003866 5.4e-12 75.1 68 63.2
SHI04223 Sapria himalayana HOM05D003290 ORTHO05D003866 5.4e-12 75.1 48 77.1
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 5.4e-12 75.1 89 44.9
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 7.1e-12 74.7 44 77.3
CARHR015160 Cardamine hirsuta HOM05D003290 ORTHO05D003866 7.1e-12 74.7 85 47.1
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 7.1e-12 74.7 44 79.5
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 1.2e-11 73.9 83 51.8
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 1.2e-11 73.9 108 44.4
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 1.6e-11 73.6 78 53.8
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 1.6e-11 73.6 83 49.4
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.6e-11 73.6 85 45.9
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 1.6e-11 73.6 89 48.3
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 1.6e-11 73.6 43 83.7
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 2.1e-11 73.2 44 79.5
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 2.1e-11 73.2 44 77.3
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 2.7e-11 72.8 43 83.7
TAR629G1764 Trochodendron aralioides HOM05D003290 ORTHO05D003866 2.7e-11 72.8 50 72.0
BolC3t21144H Brassica oleracea HOM05D003439 ORTHO05D004062 3.5e-11 72.4 43 81.4
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 3.5e-11 72.4 85 45.9
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 4.6e-11 72.0 82 51.2
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 7.9e-11 71.2 85 45.9
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 7.9e-11 71.2 97 43.3
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 1.0e-10 70.9 44 79.5
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 1.3e-10 70.5 85 43.5
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 1.3e-10 70.5 85 43.5
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 1.7e-10 70.1 93 45.2
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 5.1e-10 68.6 93 41.9
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 5.1e-10 68.6 93 41.9
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 5.1e-10 68.6 93 41.9
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 8.7e-10 67.8 49 63.3
Solyc04g018090.2 Solanum lycopersicum HOM05D003290 ORTHO05D003866 8.7e-10 67.8 95 42.1
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 8.7e-10 67.8 95 42.1
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 1.1e-09 67.4 64 51.6
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.1e-09 67.4 44 72.7
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 1.1e-09 67.4 46 67.4
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 1.1e-09 67.4 82 45.1
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.5e-09 67.0 50 62.0
A06p10720 Brassica napus HOM05D003290 ORTHO05D003866 1.9e-09 66.6 43 69.8
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 1.9e-09 66.6 61 54.1
MBI13_g26466_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 2.5e-09 66.2 45 77.8
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 2.5e-09 66.2 57 57.9
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.5e-09 66.2 70 52.9
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 4.3e-09 65.5 46 60.9
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 5.6e-09 65.1 55 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 9.6e-09 64.3 50 60.0
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 1.3e-08 63.9 45 62.2
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 2.8e-08 62.8 42 66.7
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 3.6e-08 62.4 43 67.4
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 6.2e-08 61.6 49 57.1
SEGI_29378 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 1.1e-07 60.8 43 67.4
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 2.4e-07 59.7 44 61.4
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 3.1e-07 59.3 94 39.4
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 4.0e-07 58.9 43 60.5
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 4.0e-07 58.9 50 50.0


User provided reference genes

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