Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p039185 Quercus lobata HOM05D008187 ORTHO05D009830 6.6e-96 354.0 172 100.0
CiPaw.06G058400 Carya illinoinensis HOM05D008187 ORTHO05D009830 7.1e-50 201.1 161 67.7
MD13G1015500 Malus domestica HOM05D008187 ORTHO05D009830 1.7e-43 179.9 183 55.7
Thecc.02G303500 Theobroma cacao HOM05D008187 ORTHO05D009830 2.2e-43 179.5 169 56.8
CiPaw.05G158900 Carya illinoinensis HOM05D008187 ORTHO05D009830 8.4e-43 177.6 173 57.8
Glyma.08G092600 Glycine max HOM05D008187 ORTHO05D009830 3.2e-42 175.6 175 57.7
Manes.17G089700 Manihot esculenta HOM05D008187 ORTHO05D009830 9.3e-42 174.1 170 57.6
GSVIVG01011592001 Vitis vinifera HOM05D008187 ORTHO05D009830 9.3e-42 174.1 170 57.1
Lalb_Chr07g0187941 Lupinus albus HOM05D008187 ORTHO05D009830 1.6e-41 173.3 175 56.0
Phvul.002G184100 Phaseolus vulgaris HOM05D008187 ORTHO05D009830 1.6e-41 173.3 172 57.0
Glyma.05G137300 Glycine max HOM05D008187 ORTHO05D009830 3.9e-40 168.7 175 54.9
Ca_18193_v3 Cicer arietinum L. HOM05D008187 ORTHO05D009830 5.1e-40 168.3 174 54.0
Dinv08898 Davidia involucrata HOM05D008187 ORTHO05D009830 5.1e-40 168.3 158 57.6
VMungo0251G0444 Vigna mungo HOM05D008187 ORTHO05D009830 1.9e-39 166.4 163 57.7
Manes.15G138900 Manihot esculenta HOM05D008187 ORTHO05D009830 8.2e-38 161.0 140 60.7
Potri.010G101500 Populus trichocarpa HOM05D008187 ORTHO05D009830 2.4e-37 159.5 174 54.6
CSS0005647 Camellia sinensis var. sinensis HOM05D008187 ORTHO05D009830 1.2e-36 157.1 161 54.7
Lj4g0022895 Lotus japonicus HOM05D008187 ORTHO05D009830 1.2e-36 157.1 172 51.2
Psat7g085360 Pisum sativum HOM05D008187 ORTHO05D009830 1.2e-36 157.1 173 53.8
Dinv20504 Davidia involucrata HOM05D008187 ORTHO05D009830 2.9e-35 152.5 137 57.7
Dinv20537 Davidia involucrata HOM05D008187 ORTHO05D009830 2.9e-35 152.5 137 57.7
Prupe.1G338300 Prunus persica HOM05D008187 ORTHO05D009830 2.9e-35 152.5 177 48.6
MD16G1013000 Malus domestica HOM05D008187 ORTHO05D009830 3.8e-35 152.1 187 48.1
Potri.008G140000 Populus trichocarpa HOM05D008187 ORTHO05D009830 4.9e-35 151.8 174 52.9
COL.COLO4_27577 Corchorus olitorius HOM05D008187 ORTHO05D009830 7.9e-33 144.4 170 52.4
Sabra10G0074300 Salix brachista HOM05D008187 ORTHO05D009830 2.3e-32 142.9 173 54.3
arahy.Tifrunner.gnm1.ann1.FUMC5T Arachis hypogaea HOM05D008187 ORTHO05D009830 3.9e-32 142.1 134 59.7
arahy.Tifrunner.gnm1.ann1.61TZTK Arachis hypogaea HOM05D008187 ORTHO05D009830 1.1e-31 140.6 126 61.9
Sabra08G0106100 Salix brachista HOM05D008187 ORTHO05D009830 1.1e-31 140.6 173 51.4
Ciclev10016789m.g Citrus clementina HOM05D008187 ORTHO05D009830 1.9e-31 139.8 173 49.1
FAN12G2367 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.9e-31 139.8 180 48.9
Hma1.2p1_0441F.1_g153840 Hydrangea macrophylla HOM05D008187 ORTHO05D009830 2.5e-31 139.4 152 47.4
FAN07G0781 Fragaria x ananassa HOM05D008187 ORTHO05D009830 3.3e-31 139.0 180 48.9
FAN12G2898 Fragaria x ananassa HOM05D008187 ORTHO05D009830 3.3e-31 139.0 180 48.9
TAR622G0296 Trochodendron aralioides HOM05D008187 ORTHO05D009830 1.3e-30 137.1 173 47.4
FvH4_4g26140 Fragaria vesca HOM05D008187 ORTHO05D009830 2.8e-30 136.0 180 48.3
FAN17G0865 Fragaria x ananassa HOM05D008187 ORTHO05D009830 8.2e-30 134.4 177 48.6
FAN22G0157 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.4e-29 133.7 180 47.8
Atru.chr11.1001 Acer truncatum HOM05D008187 ORTHO05D009830 2.9e-27 125.9 180 50.0
TWI77G0539 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 1.4e-26 123.6 138 48.6
TWI74G1547 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 4.2e-26 122.1 137 49.6
Haze_10806 Corylus avellana HOM05D008187 ORTHO05D009830 9.3e-26 120.9 76 71.1
Eucgr.B02651 Eucalyptus grandis HOM05D008187 ORTHO05D009830 3.6e-25 119.0 171 43.3
Gohir.D04G188100 Gossypium hirsutum HOM05D008187 ORTHO05D009830 1.3e-24 117.1 164 48.8
Gohir.A04G143800 Gossypium hirsutum HOM05D008187 ORTHO05D009830 6.7e-24 114.8 164 48.2
Gorai.012G183500 Gossypium raimondii HOM05D008187 ORTHO05D009830 4.3e-23 112.1 166 48.2
Rhsim09G0085300 Rhododendron simsii HOM05D008187 ORTHO05D009830 1.3e-22 110.5 173 42.2
FAN17G0113 Fragaria x ananassa HOM05D008187 ORTHO05D009830 3.1e-21 105.9 146 46.6
Haze_10807 Corylus avellana HOM05D008187 ORTHO05D009830 2.2e-19 99.8 66 72.7
Actinidia38421 Actinidia chinensis HOM05D008187 ORTHO05D009830 6.5e-19 98.2 133 42.9
Sed0002824 Sechium edule HOM05D008187 ORTHO05D009830 8.5e-19 97.8 132 47.7
ClCG11G000980 Citrullus lanatus HOM05D008187 ORTHO05D009830 2.5e-18 96.3 140 47.1
CANSAT78G2356 Cannabis sativa HOM05D008187 ORTHO05D009830 1.6e-17 93.6 136 43.4
MELO3C020063.2 Cucumis melo HOM05D008187 ORTHO05D009830 2.1e-17 93.2 128 49.2
MBI19_g01917_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D009830 2.1e-17 93.2 130 43.8
CsaV3_5G012950 Cucumis sativus L. HOM05D008187 ORTHO05D009830 4.7e-17 92.0 128 50.0
TPR.G11831 Trifolium pratense HOM05D008187 ORTHO05D009830 3.9e-16 89.0 124 45.2
Actinidia34059 Actinidia chinensis HOM05D008187 ORTHO05D009830 1.1e-15 87.4 139 40.3
DCAR_026822 Daucus carota HOM05D008187 ORTHO05D009830 2.0e-15 86.7 172 34.3
DCAR_023540 Daucus carota HOM05D008187 ORTHO05D009830 2.6e-15 86.3 166 36.7
Nn3g18471 Nelumbo nucifera HOM05D008187 ORTHO05D009830 3.3e-15 85.9 216 31.0
Thecc.03G009300 Theobroma cacao HOM05D000009 ORTHO05D009830 6.3e-14 81.6 67 55.2
Lj6A731T87 Lonicera japonica HOM05D008187 ORTHO05D009830 1.8e-13 80.1 132 38.6
THA.LOC104805100 Tarenaya hassleriana HOM05D010619 ORTHO05D009830 3.1e-13 79.3 144 41.0
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 6.9e-13 78.2 174 35.1
TPR.G34432 Trifolium pratense HOM05D008187 ORTHO05D009830 1.5e-12 77.0 73 50.7
HanXRQChr16g0527611 Helianthus annuus HOM05D008187 ORTHO05D009830 1.7e-11 73.6 175 33.7
HanXRQChr17g0566281 Helianthus annuus HOM05D008187 ORTHO05D009830 1.1e-10 70.9 162 34.6
Lsat_1_v5_gn_4_24181 Lactuca sativa HOM05D008187 ORTHO05D009830 1.1e-10 70.9 136 36.0
TAR374G1419 Trochodendron aralioides HOM05D003603 ORTHO05D009830 5.5e-10 68.6 134 35.8
ATR0598G345 Amborella trichopoda HOM05D003603 ORTHO05D004186 4.7e-09 65.5 126 32.5
Sp2g13350 Schrenkiella parvula HOM05D010619 ORTHO05D009830 6.7e-08 61.6 130 34.6
C09p30500 Brassica napus HOM05D010619 ORTHO05D009830 2.0e-07 60.1 148 30.4
BolC9t55912H Brassica oleracea HOM05D010619 ORTHO05D009830 2.6e-07 59.7 148 30.4
ATR0829G136 Amborella trichopoda HOM05D003603 ORTHO05D004186 3.3e-07 59.3 64 42.2
BcaB07g30724 Brassica carinata HOM05D010619 ORTHO05D009830 3.3e-07 59.3 147 29.9
BcaC04g21548 Brassica carinata HOM05D010619 ORTHO05D009830 5.7e-07 58.5 148 29.7
Lalb_Chr16g0380941 Lupinus albus HOM05D003603 ORTHO05D004186 7.4e-07 58.2 92 35.9
Thhalv10005091m.g Eutrema salsugineum HOM05D010619 ORTHO05D009830 1.3e-06 57.4 149 29.5
AL5G11040 Arabidopsis lyrata HOM05D010619 ORTHO05D009830 3.7e-06 55.8 142 30.3
Oeu062660.1 Olea europaea HOM05D008187 ORTHO05D009830 4.8e-06 55.5 63 47.6
A09p23610 Brassica napus HOM05D010619 ORTHO05D009830 6.3e-06 55.1 145 31.0
BraA09t37965Z Brassica rapa HOM05D010619 ORTHO05D009830 6.3e-06 55.1 145 31.0
GSVIVG01013000001 Vitis vinifera HOM05D003603 ORTHO05D004186 6.3e-06 55.1 64 39.1
BcaC06g31262 Brassica carinata HOM05D010619 ORTHO05D009830 8.2e-06 54.7 145 28.3
CDE03G0025 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 8.2e-06 54.7 65 41.5
CDE06G0200 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 8.2e-06 54.7 64 42.2


User provided reference genes

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