Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p035403 Quercus lobata HOM05D002079 ORTHO05D002437 3.9e-108 394.8 198 100.0
QL07p036689 Quercus lobata HOM05D002079 ORTHO05D002437 1.1e-65 253.8 157 82.8
Haze_20183 Corylus avellana HOM05D002079 ORTHO05D002437 1.3e-58 230.3 165 72.1
Cfa020030 Carpinus fangiana HOM05D002079 ORTHO05D002437 1.4e-57 226.9 165 70.3
CANSAT64G0572 Cannabis sativa HOM05D002079 ORTHO05D002437 4.3e-51 205.3 156 67.3
ClCG01G015020 Citrullus lanatus HOM05D002079 ORTHO05D002437 1.3e-47 193.7 158 64.6
CsaV3_6G041120 Cucumis sativus L. HOM05D002079 ORTHO05D002437 2.2e-47 193.0 168 61.9
RcHm_v2.0_Chr3g0475941 Rosa chinensis HOM05D002079 ORTHO05D002437 5.0e-47 191.8 160 61.9
MELO3C024587.2 Cucumis melo HOM05D002079 ORTHO05D002437 6.5e-47 191.4 168 61.9
Sed0003834 Sechium edule HOM05D002079 ORTHO05D002437 4.2e-46 188.7 159 63.5
FvH4_6g20320 Fragaria vesca HOM05D002079 ORTHO05D002437 5.5e-46 188.3 162 60.5
FAN14G2006 Fragaria x ananassa HOM05D002079 ORTHO05D002437 5.5e-46 188.3 162 60.5
Prupe.7G094500 Prunus persica HOM05D002079 ORTHO05D002437 7.2e-46 188.0 167 58.7
FAN05G1251 Fragaria x ananassa HOM05D002079 ORTHO05D002437 1.2e-45 187.2 165 61.2
FAN05G5008 Fragaria x ananassa HOM05D002079 ORTHO05D002437 1.2e-45 187.2 165 61.2
FAN09G3835 Fragaria x ananassa HOM05D002079 ORTHO05D002437 1.2e-45 187.2 165 61.2
MD12G1040400 Malus domestica HOM05D002079 ORTHO05D002437 1.2e-45 187.2 166 56.6
Manes.09G045300 Manihot esculenta HOM05D002079 ORTHO05D002437 1.6e-45 186.8 158 63.3
Nn6g34687 Nelumbo nucifera HOM05D002079 ORTHO05D002437 2.1e-45 186.4 163 63.2
arahy.Tifrunner.gnm1.ann1.6KTC2K Arachis hypogaea HOM05D002079 ORTHO05D002437 6.1e-45 184.9 163 58.9
FAN02G2352 Fragaria x ananassa HOM05D002079 ORTHO05D002437 6.1e-45 184.9 165 60.6
Glyma.03G202100 Glycine max HOM05D002079 ORTHO05D002437 7.9e-45 184.5 154 62.3
arahy.Tifrunner.gnm1.ann1.BGF2TK Arachis hypogaea HOM05D002079 ORTHO05D002437 1.0e-44 184.1 163 58.9
Manes.08G033700 Manihot esculenta HOM05D002079 ORTHO05D002437 1.8e-44 183.3 158 62.7
Lj1g0024724 Lotus japonicus HOM05D002079 ORTHO05D002437 1.1e-43 180.6 171 59.1
TWI77G0972 Tripterygium wilfordii HOM05D002079 ORTHO05D002437 2.0e-43 179.9 151 64.2
MD14G1039100 Malus domestica HOM05D002079 ORTHO05D002437 2.5e-43 179.5 165 58.2
Glyma.19G200000 Glycine max HOM05D002079 ORTHO05D002437 3.3e-43 179.1 158 60.8
Lalb_Chr20g0111361 Lupinus albus HOM05D002079 ORTHO05D002437 3.3e-43 179.1 176 58.5
Phvul.001G195600 Phaseolus vulgaris HOM05D002079 ORTHO05D002437 4.3e-43 178.7 154 63.0
PGR004G0448 Punica granatum HOM05D002079 ORTHO05D002437 5.7e-43 178.3 180 56.1
TAR623G1213 Trochodendron aralioides HOM05D002079 ORTHO05D002437 3.7e-42 175.6 160 60.6
VMungo1383G0583 Vigna mungo HOM05D002079 ORTHO05D002437 3.7e-42 175.6 154 61.7
Ca_09057_v3 Cicer arietinum L. HOM05D002079 ORTHO05D002437 4.8e-42 175.3 153 62.1
CSS0050433 Camellia sinensis var. sinensis HOM05D002079 ORTHO05D002437 1.8e-41 173.3 169 58.6
Lalb_Chr25g0287991 Lupinus albus HOM05D002079 ORTHO05D002437 2.4e-41 172.9 171 57.9
Dinv31760 Davidia involucrata HOM05D002079 ORTHO05D002437 3.1e-41 172.6 160 60.6
Hma1.2p1_0079F.1_g041820 Hydrangea macrophylla HOM05D002079 ORTHO05D002437 4.1e-41 172.2 163 57.7
TPR.G35560 Trifolium pratense HOM05D002079 ORTHO05D002437 1.5e-40 170.2 152 60.5
Aqoxy1G00656 Aquilegia oxysepala HOM05D002079 ORTHO05D002437 2.0e-40 169.9 158 59.5
TWI74G0530 Tripterygium wilfordii HOM05D002079 ORTHO05D002437 2.6e-40 169.5 151 62.3
Atru.chr8.1359 Acer truncatum HOM05D002079 ORTHO05D002437 3.4e-40 169.1 155 60.6
Potri.016G070200 Populus trichocarpa HOM05D002079 ORTHO05D002437 5.9e-40 168.3 213 50.7
PSO384G1841 Papaver somniferum HOM05D002079 ORTHO05D002437 1.0e-39 167.5 153 58.2
PSO339G0696 Papaver somniferum HOM05D002079 ORTHO05D002437 2.2e-39 166.4 153 58.2
Medtr7g106250 Medicago truncatula HOM05D002079 ORTHO05D002437 2.9e-39 166.0 149 63.1
Ciclev10011110m.g Citrus clementina HOM05D002079 ORTHO05D002437 6.5e-39 164.9 156 57.7
COL.COLO4_29572 Corchorus olitorius HOM05D002079 ORTHO05D002437 4.2e-38 162.2 190 50.5
Hund10873 Selenicereus undatus HOM05D002079 ORTHO05D002437 4.2e-38 162.2 153 62.1
TAR636G1759 Trochodendron aralioides HOM05D002079 ORTHO05D002437 4.2e-38 162.2 156 59.6
QL08p010371 Quercus lobata HOM05D002079 ORTHO05D002437 7.2e-38 161.4 135 65.9
Thecc.05G104500 Theobroma cacao HOM05D002079 ORTHO05D002437 1.6e-37 160.2 159 55.3
Rhsim03G0064600 Rhododendron simsii HOM05D002079 ORTHO05D002437 2.1e-37 159.8 156 57.1
Duzib106G1935 Durio zibethinus HOM05D002079 ORTHO05D002437 6.1e-37 158.3 159 54.7
EL10Ac5g12969 Beta vulgaris HOM05D002079 ORTHO05D002437 1.4e-36 157.1 171 59.1
Actinidia37747 Actinidia chinensis HOM05D002079 ORTHO05D002437 1.8e-36 156.8 157 57.3
Ah.02g115430 Amaranthus hybridus HOM05D002079 ORTHO05D002437 1.8e-36 156.8 170 58.8
Actinidia03888 Actinidia chinensis HOM05D002079 ORTHO05D002437 5.1e-36 155.2 157 56.7
Actinidia03998 Actinidia chinensis HOM05D002079 ORTHO05D002437 5.1e-36 155.2 157 56.7
Potri.006G203200 Populus trichocarpa HOM05D002079 ORTHO05D002437 6.7e-36 154.8 214 46.3
vmacro07477 Vaccinium macrocarpon HOM05D002079 ORTHO05D002437 4.4e-35 152.1 151 58.3
Duzib093G1055 Durio zibethinus HOM05D002079 ORTHO05D002437 1.3e-34 150.6 159 52.8
Gohir.A01G201300 Gossypium hirsutum HOM05D002079 ORTHO05D002437 1.3e-34 150.6 152 54.6
Gohir.D01G191200 Gossypium hirsutum HOM05D002079 ORTHO05D002437 1.3e-34 150.6 152 54.6
Gorai.002G235100 Gossypium raimondii HOM05D002079 ORTHO05D002437 1.3e-34 150.6 152 54.6
Sc22g0002880 Simmondsia chinensis HOM05D002079 ORTHO05D002437 1.3e-34 150.6 154 55.2
Ah.12g059240 Amaranthus hybridus HOM05D002079 ORTHO05D002437 1.7e-34 150.2 159 58.5
ECA248G3162 Erigeron canadensis HOM05D002079 ORTHO05D002437 1.7e-34 150.2 159 57.9
Hund14952 Selenicereus undatus HOM05D002079 ORTHO05D002437 2.8e-34 149.4 160 55.0
AUR62030739 Chenopodium quinoa HOM05D002079 ORTHO05D002437 3.7e-34 149.1 168 55.4
AUR62036377 Chenopodium quinoa HOM05D002079 ORTHO05D002437 3.7e-34 149.1 168 55.4
Cpa.g.sc104.30 Carica papaya HOM05D002079 ORTHO05D002437 6.3e-34 148.3 207 47.8
Sabra06G0156400 Salix brachista HOM05D002079 ORTHO05D002437 1.1e-33 147.5 206 48.5
HanXRQChr11g0347041 Helianthus annuus HOM05D002079 ORTHO05D002437 2.4e-33 146.4 164 54.9
Lj1C1053G4 Lonicera japonica HOM05D002079 ORTHO05D002437 3.1e-33 146.0 168 51.2
Lsat_1_v5_gn_1_58180 Lactuca sativa HOM05D002079 ORTHO05D002437 9.1e-33 144.4 133 63.9
Lalb_Chr02g0154461 Lupinus albus HOM05D002079 ORTHO05D002437 9.1e-33 144.4 170 50.6
MBI17_g28778_MAGBIO Magnolia biondii HOM05D002079 ORTHO05D002437 4.5e-32 142.1 172 50.6
CDE06G1521 Ceratophyllum demersum HOM05D002079 ORTHO05D002437 7.7e-32 141.4 163 52.1
Gohir.A11G315800 Gossypium hirsutum HOM05D002079 ORTHO05D002437 1.0e-31 141.0 156 50.0
Ah.12g059220 Amaranthus hybridus HOM05D002079 ORTHO05D002437 1.3e-31 140.6 168 53.0
DCAR_020702 Daucus carota HOM05D002079 ORTHO05D002437 1.3e-31 140.6 165 50.9
Gohir.D11G333000 Gossypium hirsutum HOM05D002079 ORTHO05D002437 1.3e-31 140.6 202 43.6
Gorai.007G364000 Gossypium raimondii HOM05D002079 ORTHO05D002437 1.3e-31 140.6 202 43.6
THA.LOC104816623 Tarenaya hassleriana HOM05D002079 ORTHO05D002437 9.4e-30 134.4 172 47.1
Aa31LG3G5090 Aethionema arabicum HOM05D002079 ORTHO05D002437 5.2e-28 128.6 168 45.2
Sp3g09900 Schrenkiella parvula HOM05D002079 ORTHO05D002437 1.1e-27 127.5 172 47.1
MSTRG.19308 Avicennia marina HOM05D002079 ORTHO05D002437 2.0e-27 126.7 154 53.2
Carub.0003s1099 Capsella rubella HOM05D002079 ORTHO05D002437 2.0e-27 126.7 166 45.8
Thhalv10020090m.g Eutrema salsugineum HOM05D002079 ORTHO05D002437 2.0e-27 126.7 170 47.1
CARHR086220 Cardamine hirsuta HOM05D002079 ORTHO05D002437 7.5e-27 124.8 162 45.1
AL3G23220 Arabidopsis lyrata HOM05D002079 ORTHO05D002437 9.7e-27 124.4 166 44.6
AT3G11670 Arabidopsis thaliana HOM05D002079 ORTHO05D002437 1.7e-26 123.6 186 44.6
AL222U10020 Arabidopsis lyrata HOM05D002079 ORTHO05D002437 2.8e-26 122.9 166 44.0
BolC5t34288H Brassica oleracea HOM05D002079 ORTHO05D002437 3.7e-26 122.5 172 43.0
HPP92_027177 Vanilla planifolia HOM05D002079 ORTHO05D002437 1.4e-25 120.6 160 47.5
BcaB06g25594 Brassica carinata HOM05D002079 ORTHO05D002437 1.8e-25 120.2 150 44.7
Oeu028641.1 Olea europaea HOM05D002079 ORTHO05D002437 7.0e-25 118.2 188 45.2
BcaC05g29343 Brassica carinata HOM05D002079 ORTHO05D002437 9.1e-25 117.9 137 46.7
unitig_744.g24708 Utricularia gibba HOM05D002079 ORTHO05D002437 2.0e-24 116.7 154 49.4
C05p56250 Brassica napus HOM05D002079 ORTHO05D002437 2.7e-24 116.3 137 46.0
SGA_v2.0_scaffold13G06640 Striga asiatica HOM05D002079 ORTHO05D002437 5.9e-24 115.2 165 48.5
PGSC0003DMG400028233 Solanum tuberosum HOM05D002079 ORTHO05D002437 1.0e-23 114.4 131 55.0
CDE08G1621 Ceratophyllum demersum HOM05D002079 ORTHO05D002437 1.3e-23 114.0 135 49.6
Sopen10g032410 Solanum pennellii HOM05D002079 ORTHO05D002437 1.7e-23 113.6 131 54.2
Nitab4.5_0004452g0030 Nicotiana tabacum HOM05D002079 ORTHO05D002437 2.9e-23 112.8 130 54.6
Migut.J00701 Erythranthe guttata HOM05D002079 ORTHO05D002437 3.8e-23 112.5 168 46.4
Nitab4.5_0005037g0010 Nicotiana tabacum HOM05D002079 ORTHO05D002437 3.8e-23 112.5 204 42.6
Cc06_g06570 Coffea canephora HOM05D002079 ORTHO05D002437 5.0e-23 112.1 158 49.4
A05p37670 Brassica napus HOM05D002079 ORTHO05D002437 1.1e-22 110.9 151 44.4
BraA05t22563Z Brassica rapa HOM05D002079 ORTHO05D002437 1.1e-22 110.9 151 44.4
Nitab4.5_0002844g0060 Nicotiana tabacum HOM05D002079 ORTHO05D002437 3.2e-22 109.4 132 53.0
Nitab4.5_0005513g0050 Nicotiana tabacum HOM05D002079 ORTHO05D002437 7.2e-22 108.2 130 53.8
Peaxi162Scf00211g00058 Petunia axillaris HOM05D002079 ORTHO05D002437 1.4e-17 94.0 132 48.5
PGSC0003DMG400021322 Solanum tuberosum HOM05D002079 ORTHO05D002437 3.1e-17 92.8 125 47.2
Zm00001eb243060 Zea mays HOM05D002079 ORTHO05D002437 3.1e-17 92.8 138 47.8
ATR0772G176 Amborella trichopoda HOM05D002079 ORTHO05D002437 7.0e-17 91.7 109 50.5
Solyc01g007100.3 Solanum lycopersicum HOM05D002079 ORTHO05D002437 5.9e-16 88.6 126 46.0
Sopen01g003080 Solanum pennellii HOM05D002079 ORTHO05D002437 5.9e-16 88.6 127 47.2
Peaxi162Scf00086g01511 Petunia axillaris HOM05D002079 ORTHO05D002437 1.3e-15 87.4 138 44.2
arahy.Tifrunner.gnm1.ann1.S3CVLX Arachis hypogaea HOM05D002079 ORTHO05D007614 5.0e-15 85.5 85 50.6
Os02g0539100 Oryza sativa ssp. japonica HOM05D002079 ORTHO05D002437 3.2e-14 82.8 136 44.9
HanXRQChr13g0398391 Helianthus annuus HOM05D002079 ORTHO05D002437 1.6e-13 80.5 125 45.6
CAN.G1245.1 Capsicum annuum HOM05D002079 ORTHO05D002437 6.1e-13 78.6 79 55.7
Oeu055542.1 Olea europaea HOM05D002079 ORTHO05D002437 6.1e-13 78.6 158 38.6
QL10p004775 Quercus lobata HOM05D001492 ORTHO05D022251 4.0e-12 75.9 47 85.1
SEGI_30928 Sequoiadendron giganteum HOM05D002079 ORTHO05D002437 8.8e-12 74.7 142 39.4
TAR633G2613 Trochodendron aralioides HOM05D002079 ORTHO05D002437 3.4e-11 72.8 63 60.3
Zm00001eb083520 Zea mays HOM05D002079 ORTHO05D002437 7.5e-11 71.6 141 41.8
Lj5g0023694 Lotus japonicus HOM05D002079 ORTHO05D002437 2.8e-10 69.7 155 38.1
CAN.G574.15 Capsicum annuum HOM05D002079 ORTHO05D002437 9.2e-09 64.7 166 33.7
Ca_11697_v3 Cicer arietinum L. HOM05D002079 ORTHO05D002437 1.2e-08 64.3 169 36.7
SMO352G0057 Selaginella moellendorffii HOM05D002079 ORTHO05D002437 1.0e-07 61.2 134 32.8


User provided reference genes

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