Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p034777 Quercus lobata HOM05D000536 ORTHO05D001213 1.6e-49 199.1 104 100.0
QL03p034564 Quercus lobata HOM05D000536 ORTHO05D001213 8.7e-35 150.2 79 98.7
RcHm_v2.0_Chr4g0443401 Rosa chinensis HOM05D000536 ORTHO05D001213 2.5e-29 132.1 76 89.5
Dinv18631 Davidia involucrata HOM05D000536 ORTHO05D001213 4.2e-29 131.3 79 87.3
Dinv26246 Davidia involucrata HOM05D000536 ORTHO05D001213 4.2e-29 131.3 79 87.3
Haze_10924 Corylus avellana HOM05D000536 ORTHO05D001213 9.3e-29 130.2 79 87.3
CSS0012992 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D001213 2.3e-27 125.6 76 84.2
FAN17G1849 Fragaria x ananassa HOM05D000536 ORTHO05D001213 3.9e-27 124.8 77 81.8
Eucgr.B02947 Eucalyptus grandis HOM05D000536 ORTHO05D001213 6.7e-27 124.0 80 81.2
Prupe.1G331200 Prunus persica HOM05D001584 ORTHO05D001472 6.7e-27 124.0 79 84.8
THA.LOC104822993 Tarenaya hassleriana HOM05D000536 ORTHO05D001213 8.7e-27 123.6 79 84.8
CiPaw.05G190800 Carya illinoinensis HOM05D000536 ORTHO05D001213 4.3e-26 121.3 79 82.3
MD13G1030400 Malus domestica HOM05D000536 ORTHO05D001213 4.3e-26 121.3 79 83.5
GSVIVG01011685001 Vitis vinifera HOM05D000536 ORTHO05D001213 4.3e-26 121.3 77 84.4
Thecc.02G289900 Theobroma cacao HOM05D000536 ORTHO05D001213 5.7e-26 120.9 79 83.5
Aqoxy1G00380 Aquilegia oxysepala HOM05D000536 ORTHO05D001213 7.4e-26 120.6 75 82.7
Cpa.g.sc2.224 Carica papaya HOM05D000536 ORTHO05D001213 7.4e-26 120.6 79 82.3
Hma1.2p1_0346F.1_g131620 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 7.4e-26 120.6 79 83.5
Atru.chr11.590 Acer truncatum HOM05D000536 ORTHO05D001213 9.6e-26 120.2 76 81.6
Actinidia12381 Actinidia chinensis HOM05D000536 ORTHO05D001213 1.6e-25 119.4 77 83.1
Gohir.D01G141500 Gossypium hirsutum HOM05D000536 ORTHO05D001213 1.6e-25 119.4 79 79.7
Gorai.002G174400 Gossypium raimondii HOM05D000536 ORTHO05D001213 1.6e-25 119.4 79 79.7
Ciclev10017915m.g Citrus clementina HOM05D000536 ORTHO05D001213 2.1e-25 119.0 75 82.7
FvH4_4g33881 Fragaria vesca HOM05D000536 ORTHO05D001213 2.1e-25 119.0 76 82.9
TAR622G1123 Trochodendron aralioides HOM05D000536 ORTHO05D001213 2.1e-25 119.0 74 82.4
EL10Ac6g14161 Beta vulgaris HOM05D000536 ORTHO05D001213 2.8e-25 118.6 76 84.2
Nn4g24286 Nelumbo nucifera HOM05D000536 ORTHO05D001213 2.8e-25 118.6 82 79.3
Gohir.A01G149200 Gossypium hirsutum HOM05D000536 ORTHO05D001213 3.7e-25 118.2 79 79.7
vmacro10683 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 1.1e-24 116.7 80 77.5
vmacro22447 Vaccinium macrocarpon HOM05D000536 ORTHO05D001213 1.1e-24 116.7 80 77.5
Duzib268G1889 Durio zibethinus HOM05D000536 ORTHO05D001213 1.8e-24 115.9 79 78.5
COL.COLO4_13083 Corchorus olitorius HOM05D000001 ORTHO05D000003 2.4e-24 115.5 79 78.5
Glyma.08G043300 Glycine max HOM05D000536 ORTHO05D001213 2.4e-24 115.5 83 80.7
MD16G1021100 Malus domestica HOM05D000536 ORTHO05D001213 2.4e-24 115.5 75 80.0
Potri.010G108700 Populus trichocarpa HOM05D000536 ORTHO05D001213 4.1e-24 114.8 79 78.5
Duzib251G0309 Durio zibethinus HOM05D000536 ORTHO05D001213 5.3e-24 114.4 79 75.9
CANSAT01G0368 Cannabis sativa HOM05D000536 ORTHO05D001213 6.9e-24 114.0 80 80.0
arahy.Tifrunner.gnm1.ann1.0Q9PJV Arachis hypogaea HOM05D000536 ORTHO05D001213 1.2e-23 113.2 83 79.5
arahy.Tifrunner.gnm1.ann1.5Q0AB6 Arachis hypogaea HOM05D000536 ORTHO05D001213 1.2e-23 113.2 83 79.5
CiPaw.06G049600 Carya illinoinensis HOM05D000536 ORTHO05D001213 1.2e-23 113.2 79 81.0
Glyma.05G235900 Glycine max HOM05D000536 ORTHO05D001213 1.2e-23 113.2 83 79.5
VMungo0251G2456 Vigna mungo HOM05D000536 ORTHO05D001213 1.2e-23 113.2 82 78.0
Ah.03g137390 Amaranthus hybridus HOM05D000536 ORTHO05D001213 1.5e-23 112.8 76 78.9
AUR62039540 Chenopodium quinoa HOM05D000536 ORTHO05D001213 3.4e-23 111.7 77 74.0
Sc04g0005270 Simmondsia chinensis HOM05D000536 ORTHO05D001213 3.4e-23 111.7 80 78.8
MSTRG.2143 Avicennia marina HOM05D000536 ORTHO05D001213 4.5e-23 111.3 80 78.8
Hund24955 Selenicereus undatus HOM05D000536 ORTHO05D001213 4.5e-23 111.3 75 80.0
Manes.15G132700 Manihot esculenta HOM05D000536 ORTHO05D001213 7.6e-23 110.5 79 73.4
Hund24940 Selenicereus undatus HOM05D000536 ORTHO05D001213 7.6e-23 110.5 75 77.3
THA.LOC104809129 Tarenaya hassleriana HOM05D000536 ORTHO05D001213 1.0e-22 110.2 79 78.5
ClCG01G006420 Citrullus lanatus HOM05D000536 ORTHO05D001213 1.7e-22 109.4 79 77.2
DCAR_007320 Daucus carota HOM05D000536 ORTHO05D001213 1.7e-22 109.4 76 75.0
Sabra08G0101600 Salix brachista HOM05D000536 ORTHO05D001213 1.7e-22 109.4 79 75.9
Phvul.002G319300 Phaseolus vulgaris HOM05D000536 ORTHO05D001213 2.9e-22 108.6 79 78.5
Aa31LG7G7260 Aethionema arabicum HOM05D000536 ORTHO05D001213 3.8e-22 108.2 79 73.4
ATR0564G375 Amborella trichopoda HOM05D000536 ORTHO05D001213 3.8e-22 108.2 79 77.2
Oeu018608.1 Olea europaea HOM05D000536 ORTHO05D001213 3.8e-22 108.2 80 78.8
Potri.008G133000 Populus trichocarpa HOM05D000536 ORTHO05D001213 3.8e-22 108.2 79 74.7
Manes.17G081701 Manihot esculenta HOM05D000536 ORTHO05D001213 6.5e-22 107.5 75 74.7
Nn3g18315 Nelumbo nucifera HOM05D000536 ORTHO05D001213 8.4e-22 107.1 82 70.7
Cfa014993 Carpinus fangiana HOM05D000536 ORTHO05D001213 1.4e-21 106.3 61 86.9
MELO3C005289.2 Cucumis melo HOM05D000536 ORTHO05D001213 1.4e-21 106.3 79 75.9
CsaV3_5G028260 Cucumis sativus L. HOM05D000536 ORTHO05D001213 1.4e-21 106.3 79 75.9
Cc11_g08070 Coffea canephora HOM05D000536 ORTHO05D001213 1.9e-21 105.9 77 72.7
Lj4g0013361 Lotus japonicus HOM05D000536 ORTHO05D001213 2.5e-21 105.5 83 73.5
TWI53G0834 Tripterygium wilfordii HOM05D000536 ORTHO05D001213 4.2e-21 104.8 79 74.7
SalBow2G0934 Salvia bowleyana HOM05D001584 ORTHO05D001472 5.5e-21 104.4 81 77.8
CARHR023680 Cardamine hirsuta HOM05D000536 ORTHO05D001213 7.2e-21 104.0 79 74.7
MSTRG.13613 Avicennia marina HOM05D000536 ORTHO05D001213 9.3e-21 103.6 81 75.3
Lsat_1_v5_gn_4_12901 Lactuca sativa HOM05D000536 ORTHO05D001213 2.1e-20 102.4 79 68.4
Nitab4.5_0000238g0050 Nicotiana tabacum HOM05D000536 ORTHO05D001213 2.7e-20 102.1 95 66.3
Carub.0001s2281 Capsella rubella HOM05D000536 ORTHO05D001213 6.1e-20 100.9 79 72.2
CAN.G574.54 Capsicum annuum HOM05D000536 ORTHO05D001213 1.0e-19 100.1 76 69.7
BcaB03g11929 Brassica carinata HOM05D000536 ORTHO05D001213 1.3e-19 99.8 80 73.8
PGSC0003DMG400032159 Solanum tuberosum HOM05D000536 ORTHO05D001213 1.3e-19 99.8 77 70.1
Thhalv10009103m.g Eutrema salsugineum HOM05D000536 ORTHO05D001213 1.8e-19 99.4 74 73.0
AL1G37010 Arabidopsis lyrata HOM05D000120 ORTHO05D001213 2.3e-19 99.0 79 70.9
PSO478G3635 Papaver somniferum HOM05D000536 ORTHO05D001213 3.0e-19 98.6 94 67.0
MBI13_g01847_MAGBIO Magnolia biondii HOM05D000536 ORTHO05D001213 5.1e-19 97.8 97 63.9
AT1G23220 Arabidopsis thaliana HOM05D000536 ORTHO05D001213 6.7e-19 97.4 79 70.9
Sp1g20690 Schrenkiella parvula HOM05D000536 ORTHO05D001213 6.7e-19 97.4 80 71.2
BcaC07g39190 Brassica carinata HOM05D000536 ORTHO05D001213 8.7e-19 97.1 80 71.2
BolC8t49819H Brassica oleracea HOM05D000536 ORTHO05D001213 8.7e-19 97.1 80 71.2
A08p28290 Brassica napus HOM05D000536 ORTHO05D001213 1.5e-18 96.3 80 71.2
C08p21800 Brassica napus HOM05D000536 ORTHO05D001213 1.5e-18 96.3 80 70.0
BraA08t34760Z Brassica rapa HOM05D000536 ORTHO05D001213 1.5e-18 96.3 80 70.0
PSO017G1255 Papaver somniferum HOM05D000536 ORTHO05D001213 1.9e-18 95.9 95 65.3
TPR.G32674 Trifolium pratense HOM05D000536 ORTHO05D001213 1.9e-18 95.9 81 69.1
Medtr8g104900 Medicago truncatula HOM05D000536 ORTHO05D001213 2.5e-18 95.5 79 67.1
Sopen01g001470 Solanum pennellii HOM05D000536 ORTHO05D001213 3.3e-18 95.1 77 67.5
A07p13950 Brassica napus HOM05D000536 ORTHO05D001213 5.7e-18 94.4 80 70.0
BraA07t29151Z Brassica rapa HOM05D000536 ORTHO05D001213 5.7e-18 94.4 80 70.0
Glyma.16G151800 Glycine max HOM05D000536 ORTHO05D001213 5.7e-18 94.4 77 67.5
Solyc01g005460.4 Solanum lycopersicum HOM05D000536 ORTHO05D001213 5.7e-18 94.4 77 67.5
HanXRQChr12g0377771 Helianthus annuus HOM05D000536 ORTHO05D001213 7.4e-18 94.0 77 63.6
Glyma.02G070300 Glycine max HOM05D000536 ORTHO05D001213 9.7e-18 93.6 80 71.2
Rhsim09G0092200 Rhododendron simsii HOM05D000536 ORTHO05D001213 9.7e-18 93.6 96 61.5
Sp5g25880 Schrenkiella parvula HOM05D000536 ORTHO05D001213 9.7e-18 93.6 75 68.0
C05p22450 Brassica napus HOM05D000536 ORTHO05D001213 1.3e-17 93.2 80 68.8
BcaC06g35028 Brassica carinata HOM05D000536 ORTHO05D001213 1.6e-17 92.8 80 68.8
C07p20500 Brassica napus HOM05D000536 ORTHO05D001213 1.6e-17 92.8 80 68.8
BolC7t42576H Brassica oleracea HOM05D000536 ORTHO05D001213 1.6e-17 92.8 80 68.8
A09p41540 Brassica napus HOM05D000536 ORTHO05D001213 2.2e-17 92.4 80 68.8
BraA09t39645Z Brassica rapa HOM05D000536 ORTHO05D001213 2.2e-17 92.4 80 68.8
CDE06G2033 Ceratophyllum demersum HOM05D000536 ORTHO05D001213 2.8e-17 92.0 78 66.7
Sed0003228 Sechium edule HOM05D000536 ORTHO05D001213 3.7e-17 91.7 79 69.6
SGA_v2.0_scaffold139G35394 Striga asiatica HOM05D000536 ORTHO05D001213 3.7e-17 91.7 79 65.8
BcaB03g14155 Brassica carinata HOM05D000536 ORTHO05D001213 6.3e-17 90.9 80 67.5
BcaC05g26232 Brassica carinata HOM05D000536 ORTHO05D001213 6.3e-17 90.9 80 67.5
BolC5t30943H Brassica oleracea HOM05D000536 ORTHO05D001213 6.3e-17 90.9 80 67.5
Oeu062650.1 Olea europaea HOM05D000536 ORTHO05D001213 6.3e-17 90.9 80 70.0
BcaB07g32313 Brassica carinata HOM05D000536 ORTHO05D001213 3.1e-16 88.6 80 67.5
CDE07G1071 Ceratophyllum demersum HOM05D000536 ORTHO05D001213 3.1e-16 88.6 78 62.8
Phvul.004G077100 Phaseolus vulgaris HOM05D000536 ORTHO05D001213 6.9e-16 87.4 77 68.8
Lj2g0016195 Lotus japonicus HOM05D000536 ORTHO05D001213 9.0e-16 87.0 91 61.5
VMungo0464G1315 Vigna mungo HOM05D000536 ORTHO05D001213 9.0e-16 87.0 77 68.8
Lalb_Chr16g0387761 Lupinus albus HOM05D000536 ORTHO05D001213 1.5e-15 86.3 80 68.8
Nitab4.5_0009944g0040 Nicotiana tabacum HOM05D000536 ORTHO05D001213 7.7e-15 84.0 82 64.6
Lalb_Chr05g0222311 Lupinus albus HOM05D000536 ORTHO05D001213 1.3e-14 83.2 82 64.6
TPR.G36864 Trifolium pratense HOM05D000536 ORTHO05D001213 1.3e-14 83.2 92 59.8
Medtr1g031880 Medicago truncatula HOM05D000536 ORTHO05D001213 1.4e-13 79.7 93 57.0
HPP92_024822 Vanilla planifolia HOM05D000536 ORTHO05D001213 3.2e-13 78.6 102 51.0
HanXRQChr08g0212401 Helianthus annuus HOM05D000536 ORTHO05D001213 7.9e-12 73.9 92 52.2
HPP92_020323 Vanilla planifolia HOM05D000536 ORTHO05D001213 1.7e-09 66.2 108 45.4
HPP92_020329 Vanilla planifolia HOM05D000536 ORTHO05D001213 1.7e-09 66.2 108 45.4
Lj3P866T44 Lonicera japonica HOM05D000536 ORTHO05D001213 8.2e-09 63.9 37 86.5
Hma1.2p1_0003F.1_g003600 Hydrangea macrophylla HOM05D000536 ORTHO05D001213 1.4e-08 63.2 43 74.4
unitig_27.g25313 Utricularia gibba HOM05D000536 ORTHO05D001213 2.0e-07 59.3 95 48.4
SEGI_07176 Sequoiadendron giganteum HOM05D000536 ORTHO05D001213 4.5e-07 58.2 45 68.9
Zm00001eb190180 Zea mays HOM05D000536 ORTHO05D001213 1.3e-06 56.6 46 67.4
Zm00001eb253710 Zea mays HOM05D000536 ORTHO05D001213 1.3e-06 56.6 46 67.4
Os02g0733001 Oryza sativa ssp. japonica HOM05D000536 ORTHO05D001213 1.7e-06 56.2 46 67.4
Zm00001eb183270 Zea mays HOM05D000536 ORTHO05D001213 1.7e-06 56.2 52 59.6
Zm00001eb245220 Zea mays HOM05D000536 ORTHO05D001213 2.9e-06 55.5 52 59.6
Ca_17291_v3 Cicer arietinum L. HOM05D001584 ORTHO05D001472 8.5e-06 53.9 37 78.4


User provided reference genes

Program Settings