Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 6.6e-165 583.9 293 100.0
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 7.9e-126 454.1 290 79.3
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 5.5e-119 431.4 294 74.5
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 2.9e-112 409.1 294 67.7
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 5.0e-112 408.3 294 70.1
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 4.2e-111 405.2 289 70.6
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 4.7e-110 401.7 294 70.1
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 5.2e-109 398.3 291 67.0
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 8.8e-109 397.5 294 68.7
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 8.8e-109 397.5 294 68.7
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.3e-108 395.6 294 67.3
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 9.7e-108 394.0 294 67.0
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 9.7e-108 394.0 294 67.0
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.3e-107 393.7 294 67.0
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 8.3e-107 391.0 295 68.5
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 3.1e-106 389.0 290 68.6
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 7.0e-106 387.9 294 67.7
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 9.1e-106 387.5 295 67.1
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.6e-105 386.7 294 66.3
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.0e-105 386.3 298 66.8
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 2.0e-105 386.3 300 64.7
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 2.0e-105 386.3 288 64.9
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.0e-105 386.3 290 69.3
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.9e-105 384.8 295 67.8
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.7e-104 383.3 293 67.2
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 2.9e-104 382.5 295 65.4
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 5.0e-104 381.7 294 66.7
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 6.5e-104 381.3 291 68.4
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 3.2e-103 379.0 288 65.6
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 3.2e-103 379.0 288 66.0
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 5.5e-103 378.3 295 67.5
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 1.2e-102 377.1 289 67.5
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 2.1e-102 376.3 288 66.0
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 2.1e-102 376.3 294 66.3
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 2.1e-102 376.3 295 67.1
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 4.7e-102 375.2 303 64.7
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 4.0e-101 372.1 297 67.7
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 4.0e-101 372.1 288 66.0
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.7e-100 368.2 295 65.8
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.7e-99 366.7 295 65.4
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 6.3e-99 364.8 298 65.8
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 8.3e-99 364.4 280 67.5
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 1.8e-98 363.2 288 64.2
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 3.1e-98 362.5 276 68.1
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.6e-97 360.1 291 61.9
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 5.9e-97 358.2 294 63.3
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 7.7e-97 357.8 296 65.5
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.3e-96 357.1 297 65.7
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 6.6e-96 354.8 293 60.4
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 6.6e-96 354.8 294 63.3
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 8.6e-96 354.4 295 64.1
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.5e-95 353.6 298 62.1
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 4.2e-95 352.1 291 61.5
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 7.2e-95 351.3 294 63.3
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 2.3e-93 346.3 257 69.3
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 4.0e-93 345.5 262 65.3
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.6e-92 342.8 325 58.5
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.6e-92 342.8 294 58.8
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 6.3e-91 338.2 325 58.5
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 6.3e-91 338.2 295 59.3
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 2.4e-90 336.3 254 67.7
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 3.1e-90 335.9 290 63.1
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 5.4e-90 335.1 294 57.8
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.6e-89 333.6 293 58.0
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 2.0e-89 333.2 291 63.2
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 2.0e-89 333.2 291 58.4
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 1.0e-88 330.9 289 61.6
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.9e-87 326.6 289 57.8
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 2.5e-87 326.2 307 58.6
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 3.3e-87 325.9 291 58.1
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.0e-85 320.9 283 58.0
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 4.0e-85 318.9 294 57.8
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.2e-84 317.4 298 56.4
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.2e-84 317.4 298 56.4
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 2.6e-84 316.2 309 55.0
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.4e-84 315.5 294 57.8
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 9.8e-84 314.3 245 65.7
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.7e-83 313.5 285 59.3
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 2.2e-83 313.2 290 56.6
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 2.9e-83 312.8 307 55.7
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.9e-83 312.8 307 55.7
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 2.9e-83 312.8 307 55.7
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 2.4e-82 309.7 293 56.3
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.2e-82 309.3 294 54.4
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 9.2e-82 307.8 295 56.3
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.2e-81 307.4 212 69.3
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 2.0e-81 306.6 234 63.7
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 7.8e-81 304.7 294 53.1
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.7e-80 303.5 295 53.9
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 3.0e-80 302.8 300 55.7
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 2.5e-79 299.7 306 53.6
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 6.2e-78 295.0 294 53.1
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 6.4e-75 285.0 298 52.0
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 8.3e-75 284.6 308 53.6
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 2.4e-74 283.1 311 51.4
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.7e-73 279.6 295 52.2
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 6.0e-73 278.5 310 51.6
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 3.9e-72 275.8 245 58.0
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 5.1e-72 275.4 310 50.3
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.1e-71 274.2 310 50.6
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.8e-69 266.9 235 62.1
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.8e-69 266.9 235 62.1
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 3.1e-69 266.2 303 49.8
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.3e-67 260.8 275 52.0
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 3.2e-66 256.1 291 50.2
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.1e-65 253.4 200 68.0
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 3.9e-64 249.2 266 48.9
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.5e-63 247.3 216 62.0
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 2.4e-61 240.0 244 50.0
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.0e-60 236.9 273 46.9
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.1e-58 231.1 236 54.7
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.7e-56 221.5 169 62.1
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 8.7e-56 221.5 230 48.7
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 6.2e-54 215.3 245 51.0
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 8.1e-54 214.9 138 74.6
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 3.8e-51 206.1 236 46.6
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 3.8e-51 206.1 244 43.9
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 3.8e-51 206.1 208 49.5
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 4.9e-51 205.7 294 40.5
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.4e-50 204.1 122 74.6
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.5e-47 194.1 174 58.6
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 4.5e-44 182.6 287 41.5
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.8e-43 179.5 199 48.2
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 9.3e-42 174.9 130 63.8
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 7.9e-41 171.8 133 63.9
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 3.9e-40 169.5 204 44.6
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 8.7e-40 168.3 179 52.5
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.5e-39 167.5 273 38.8
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 4.3e-39 166.0 146 59.6
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 2.6e-36 156.8 208 40.9
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 3.4e-36 156.4 159 54.1
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 7.1e-34 148.7 101 69.3
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.6e-33 147.5 200 42.5
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.1e-33 147.1 154 55.8
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-32 144.1 148 47.3
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 4.0e-29 132.9 156 48.7
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 4.5e-28 129.4 249 30.9
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 9.3e-26 121.7 161 44.1
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.2e-25 121.3 73 78.1
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 7.7e-20 102.1 168 39.9
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 8.8e-16 88.6 65 69.2
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 5.7e-15 85.9 170 28.2
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 6.9e-13 79.0 49 71.4
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 2.0e-07 60.8 186 28.0


User provided reference genes

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