Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 9.3e-27 123.2 85 100.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 4.5e-13 77.8 49 89.8
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 2.3e-09 65.5 47 83.0
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 6.7e-09 63.9 50 80.0
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 1.9e-08 62.4 50 78.0
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 3.3e-08 61.6 50 76.0
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 7.4e-08 60.5 40 90.0
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 1.3e-07 59.7 42 81.0
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 1.7e-07 59.3 50 74.0
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 1.7e-07 59.3 49 69.4
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 2.8e-07 58.5 50 74.0
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 3.7e-07 58.2 47 74.5
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 4.8e-07 57.8 50 72.0
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 4.8e-07 57.8 50 72.0
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 6.3e-07 57.4 50 72.0
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 6.3e-07 57.4 50 72.0
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 6.3e-07 57.4 50 70.0
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 6.3e-07 57.4 50 70.0
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 6.3e-07 57.4 50 70.0
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 6.3e-07 57.4 49 65.3
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 8.2e-07 57.0 49 73.5
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 8.2e-07 57.0 50 72.0
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 8.2e-07 57.0 50 72.0
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 8.2e-07 57.0 49 65.3
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 1.1e-06 56.6 50 72.0
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 1.1e-06 56.6 50 70.0
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.1e-06 56.6 50 70.0
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 1.4e-06 56.2 48 72.9
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 1.4e-06 56.2 50 70.0
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 1.4e-06 56.2 49 73.5
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 1.8e-06 55.8 50 68.0
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.4e-06 55.5 50 70.0
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 3.1e-06 55.1 50 70.0
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 3.1e-06 55.1 50 70.0
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 3.1e-06 55.1 43 72.1
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 3.1e-06 55.1 49 63.3
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 4.1e-06 54.7 49 63.3
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 5.3e-06 54.3 50 66.0
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 6.9e-06 53.9 50 68.0
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 6.9e-06 53.9 49 63.3
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 6.9e-06 53.9 49 63.3
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 6.9e-06 53.9 49 63.3


User provided reference genes

Program Settings