Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p032673 Quercus lobata HOM05D003193 ORTHO05D337941 2.1e-29 131.7 69 100.0
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 1.9e-09 65.5 32 96.9
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 1.9e-09 65.5 32 96.9
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 1.9e-09 65.5 32 96.9
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 1.9e-09 65.5 32 96.9
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 3.2e-09 64.7 39 82.1
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 3.2e-09 64.7 39 82.1
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 4.2e-09 64.3 34 88.2
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 4.2e-09 64.3 32 93.8
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 9.3e-09 63.2 47 70.2
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 9.3e-09 63.2 32 93.8
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 9.3e-09 63.2 47 70.2
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 9.3e-09 63.2 32 93.8
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 9.3e-09 63.2 47 70.2
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 1.2e-08 62.8 47 70.2
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 2.1e-08 62.0 47 70.2
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 2.1e-08 62.0 47 70.2
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 2.1e-08 62.0 47 68.1
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 2.1e-08 62.0 47 68.1
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 2.7e-08 61.6 47 68.1
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 2.7e-08 61.6 47 68.1
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 2.7e-08 61.6 47 68.1
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 2.7e-08 61.6 47 68.1
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 3.5e-08 61.2 47 68.1
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 4.6e-08 60.8 32 90.6
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 4.6e-08 60.8 32 90.6
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 4.6e-08 60.8 47 68.1
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 4.6e-08 60.8 47 68.1
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 4.6e-08 60.8 47 68.1
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 4.6e-08 60.8 47 66.0
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 4.6e-08 60.8 47 68.1
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 4.6e-08 60.8 47 66.0
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 4.6e-08 60.8 47 68.1
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 7.9e-08 60.1 47 66.0
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 7.9e-08 60.1 32 87.5
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.0e-07 59.7 47 66.0
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 1.0e-07 59.7 47 66.0
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 1.0e-07 59.7 47 66.0
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.0e-07 59.7 31 90.3
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 1.3e-07 59.3 47 66.0
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 1.3e-07 59.3 47 68.1
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 1.3e-07 59.3 47 68.1
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 1.3e-07 59.3 47 68.1
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 1.8e-07 58.9 47 63.8
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.8e-07 58.9 47 68.1
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.8e-07 58.9 47 68.1
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 1.8e-07 58.9 32 87.5
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 2.3e-07 58.5 32 87.5
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 2.3e-07 58.5 47 66.0
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 3.0e-07 58.2 47 63.8
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 3.0e-07 58.2 47 66.0
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.0e-07 58.2 47 66.0
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.0e-07 58.2 47 66.0
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.0e-07 58.2 47 66.0
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 3.0e-07 58.2 47 66.0
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 3.9e-07 57.8 47 63.8
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 3.9e-07 57.8 47 63.8
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 3.9e-07 57.8 47 63.8
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 5.1e-07 57.4 47 63.8
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 5.1e-07 57.4 47 63.8
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 6.7e-07 57.0 47 61.7
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 8.7e-07 56.6 47 61.7
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 8.7e-07 56.6 47 63.8
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 1.1e-06 56.2 47 63.8
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.1e-06 56.2 47 63.8
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.1e-06 56.2 47 63.8
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 1.5e-06 55.8 31 87.1
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 1.5e-06 55.8 47 66.0
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 1.5e-06 55.8 47 63.8
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 1.5e-06 55.8 47 61.7
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 1.9e-06 55.5 47 63.8
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 1.9e-06 55.5 47 63.8
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 2.5e-06 55.1 47 63.8
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 2.5e-06 55.1 47 63.8
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 2.5e-06 55.1 47 63.8
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 2.5e-06 55.1 47 63.8
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 4.3e-06 54.3 47 61.7
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 4.3e-06 54.3 47 61.7
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 7.4e-06 53.5 47 59.6
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 7.4e-06 53.5 47 61.7
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 9.6e-06 53.1 47 61.7
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 9.6e-06 53.1 47 61.7


User provided reference genes

Program Settings