Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 1.2e-56 223.0 116 100.0
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 1.2e-56 223.0 116 100.0
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 1.0e-55 219.9 116 99.1
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 2.4e-49 198.7 116 87.9
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 1.4e-44 183.0 113 85.0
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 1.5e-43 179.5 114 83.3
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 6.3e-42 174.1 115 80.0
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 6.3e-42 174.1 114 80.7
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 8.2e-42 173.7 115 77.4
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 1.2e-40 169.9 115 78.3
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 2.0e-40 169.1 114 80.7
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 3.4e-40 168.3 115 76.5
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 5.9e-40 167.5 113 75.2
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 5.9e-40 167.5 114 74.6
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 5.9e-40 167.5 114 74.6
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 5.9e-40 167.5 114 74.6
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 1.7e-39 166.0 114 74.6
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 2.2e-39 165.6 114 76.3
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 2.9e-39 165.2 111 76.6
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 2.9e-39 165.2 115 73.9
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 2.9e-39 165.2 114 78.1
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 2.9e-39 165.2 114 78.1
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 5.0e-39 164.5 115 76.5
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 6.5e-39 164.1 116 75.9
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 6.5e-39 164.1 113 73.5
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 8.5e-39 163.7 111 75.7
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 5.5e-38 161.0 111 75.7
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 7.2e-38 160.6 115 72.2
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 9.4e-38 160.2 120 74.2
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 1.6e-37 159.5 111 73.0
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 2.1e-37 159.1 114 74.6
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 6.1e-37 157.5 121 71.1
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 6.1e-37 157.5 121 71.1
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 6.1e-37 157.5 113 74.3
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 7.9e-37 157.1 119 72.3
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 2.3e-36 155.6 108 75.0
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 3.0e-36 155.2 119 71.4
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 3.9e-36 154.8 108 78.7
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 3.9e-36 154.8 108 73.1
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 1.1e-35 153.3 114 72.8
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 1.1e-35 153.3 108 75.0
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 1.5e-35 152.9 114 72.8
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.5e-35 152.9 117 71.8
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 2.0e-35 152.5 110 74.5
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 2.6e-35 152.1 108 73.1
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 2.6e-35 152.1 107 73.8
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 2.6e-35 152.1 105 75.2
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 3.3e-35 151.8 102 80.4
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 3.3e-35 151.8 108 73.1
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 4.4e-35 151.4 99 83.8
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 4.4e-35 151.4 108 75.0
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 5.7e-35 151.0 113 72.6
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 5.7e-35 151.0 114 73.7
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 9.7e-35 150.2 116 70.7
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 9.7e-35 150.2 118 71.2
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 1.3e-34 149.8 114 68.4
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.3e-34 149.8 115 71.3
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 1.7e-34 149.4 97 81.4
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 2.2e-34 149.1 114 71.9
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 2.8e-34 148.7 108 72.2
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 4.8e-34 147.9 101 77.2
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 4.8e-34 147.9 105 77.1
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 8.2e-34 147.1 109 73.4
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 8.2e-34 147.1 108 73.1
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 1.1e-33 146.7 108 71.3
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 1.1e-33 146.7 107 69.2
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 1.8e-33 146.0 105 73.3
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 2.4e-33 145.6 111 70.3
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 2.4e-33 145.6 99 73.7
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 2.4e-33 145.6 108 70.4
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 3.1e-33 145.2 108 71.3
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 7.0e-33 144.1 103 72.8
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 7.0e-33 144.1 108 69.4
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 7.0e-33 144.1 104 74.0
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 9.1e-33 143.7 108 69.4
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 1.2e-32 143.3 97 80.4
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 1.2e-32 143.3 97 80.4
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 1.2e-32 143.3 107 72.0
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 3.5e-32 141.7 92 80.4
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 4.5e-32 141.4 124 65.3
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 4.5e-32 141.4 113 70.8
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 5.9e-32 141.0 108 71.3
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 2.2e-31 139.0 111 68.5
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 2.2e-31 139.0 102 68.6
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 3.8e-31 138.3 108 68.5
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 3.8e-31 138.3 107 66.4
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 5.0e-31 137.9 105 70.5
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 5.0e-31 137.9 111 68.5
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 8.5e-31 137.1 107 65.4
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 2.5e-30 135.6 92 79.3
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 2.5e-30 135.6 110 65.5
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 5.5e-30 134.4 89 74.2
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 9.4e-30 133.7 82 80.5
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 1.6e-29 132.9 88 73.9
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.7e-26 122.9 81 75.3
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 3.7e-26 121.7 82 75.6
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 8.2e-26 120.6 114 61.4
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 1.1e-25 120.2 150 50.0
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 6.5e-23 110.9 105 60.0
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 2.5e-22 109.0 85 63.5
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 2.5e-22 109.0 85 63.5
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 1.6e-21 106.3 125 48.8
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 1.6e-21 106.3 84 60.7
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 6.1e-21 104.4 85 55.3
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 1.2e-19 100.1 85 60.0
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 9.7e-19 97.1 82 64.6
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 9.7e-19 97.1 82 64.6
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 1.7e-18 96.3 83 66.3
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 2.2e-18 95.9 115 48.7
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 3.7e-18 95.1 81 64.2
CBR_g51472 Chara braunii HOM05D006721 ORTHO05D000476 1.3e-15 86.7 89 48.3
MCO10G233 Micromonas commoda HOM05D006721 ORTHO05D000476 5.0e-15 84.7 80 53.8
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 3.2e-14 82.0 58 72.4
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 3.2e-14 82.0 76 67.1
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 1.6e-13 79.7 58 70.7
Cre02.g105950 Chlamydomonas reinhardtii HOM05D006721 ORTHO05D000476 4.7e-13 78.2 85 49.4
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.0e-12 77.0 81 53.1
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 1.8e-12 76.3 58 65.5
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 1.8e-12 76.3 78 62.8
PRCOL_00003504 Prasinoderma coloniale HOM05D006721 ORTHO05D000476 3.0e-12 75.5 73 50.7
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 8.8e-12 73.9 51 66.7
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 1.1e-09 67.0 45 77.8
DCAR_030976 Daucus carota HOM05D006721 ORTHO05D000476 4.1e-09 65.1 58 60.3
SHI31376 Sapria himalayana HOM05D006721 ORTHO05D000476 2.9e-07 58.9 46 58.7
A09p05680 Brassica napus HOM05D006721 ORTHO05D000476 7.2e-06 54.3 28 92.9
BolC5t30890H Brassica oleracea HOM05D000263 ORTHO05D028311 9.5e-06 53.9 41 65.9


User provided reference genes

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