Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 3.2e-102 375.6 262 100.0
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 4.5e-72 275.4 261 70.1
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 9.1e-57 224.6 127 89.8
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 9.1e-57 224.6 261 56.3
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 2.0e-56 223.4 264 61.0
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 4.2e-54 215.7 261 52.1
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 1.0e-52 211.1 261 50.6
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 3.0e-52 209.5 127 84.3
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 2.0e-51 206.8 264 50.4
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 2.6e-51 206.5 261 50.2
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 7.5e-51 204.9 127 81.9
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 9.8e-51 204.5 262 54.6
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 9.8e-51 204.5 261 52.1
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 3.7e-50 202.6 125 82.4
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 8.3e-50 201.4 261 49.0
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 1.1e-49 201.1 127 81.1
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 1.8e-49 200.3 127 81.9
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 3.2e-49 199.5 127 81.9
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 7.0e-49 198.4 143 71.3
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 9.2e-49 198.0 265 48.7
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 1.6e-48 197.2 129 79.1
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 3.5e-48 196.1 143 71.3
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 5.9e-48 195.3 263 49.4
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 1.0e-47 194.5 134 76.9
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 1.0e-47 194.5 266 48.1
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 1.0e-47 194.5 134 74.6
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 1.3e-47 194.1 124 79.8
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 1.7e-47 193.7 124 79.0
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 1.7e-47 193.7 127 78.7
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.7e-47 193.7 127 78.7
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.9e-47 193.0 127 78.0
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 3.9e-47 192.6 143 70.6
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 5.0e-47 192.2 132 78.0
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 5.0e-47 192.2 127 78.0
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 6.6e-47 191.8 127 76.4
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 8.6e-47 191.4 124 79.0
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 1.1e-46 191.0 266 47.4
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 1.1e-46 191.0 128 75.8
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 1.5e-46 190.7 129 75.2
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 1.5e-46 190.7 129 75.2
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 1.9e-46 190.3 127 76.4
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 2.5e-46 189.9 143 69.2
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 3.3e-46 189.5 124 79.0
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.3e-46 189.5 122 80.3
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.3e-46 189.5 122 80.3
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 3.3e-46 189.5 128 76.6
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 4.3e-46 189.1 122 81.1
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 4.3e-46 189.1 143 69.2
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 7.3e-46 188.3 143 69.2
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 9.5e-46 188.0 261 46.4
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 9.5e-46 188.0 122 79.5
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 1.2e-45 187.6 127 76.4
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.2e-45 187.6 124 75.0
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 2.1e-45 186.8 133 72.9
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 2.8e-45 186.4 127 74.0
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 6.1e-45 185.3 143 69.2
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 8.0e-45 184.9 122 79.5
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 8.0e-45 184.9 123 78.0
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 1.4e-44 184.1 125 76.0
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 1.8e-44 183.7 127 74.8
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 2.3e-44 183.3 127 73.2
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 2.3e-44 183.3 126 75.4
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 2.3e-44 183.3 124 75.0
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 2.3e-44 183.3 143 67.1
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 3.1e-44 183.0 127 71.7
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 4.0e-44 182.6 128 72.7
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 5.2e-44 182.2 126 74.6
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 6.8e-44 181.8 126 74.6
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 6.8e-44 181.8 125 74.4
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 8.9e-44 181.4 127 75.6
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 8.9e-44 181.4 261 51.0
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 8.9e-44 181.4 126 74.6
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 1.2e-43 181.0 135 71.9
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 1.5e-43 180.6 143 66.4
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 2.0e-43 180.3 124 75.0
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 3.4e-43 179.5 127 73.2
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 3.4e-43 179.5 126 73.8
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 5.8e-43 178.7 125 74.4
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 7.5e-43 178.3 127 71.7
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 7.5e-43 178.3 126 74.6
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 1.3e-42 177.6 127 71.7
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 1.3e-42 177.6 261 44.4
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.7e-42 177.2 122 75.4
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 2.2e-42 176.8 129 70.5
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.2e-42 176.8 122 76.2
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 2.2e-42 176.8 130 68.5
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 4.9e-42 175.6 127 71.7
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 4.9e-42 175.6 121 76.0
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 8.3e-42 174.9 123 73.2
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 1.4e-41 174.1 123 74.8
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 2.4e-41 173.3 143 65.0
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 3.2e-41 172.9 126 69.8
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 4.1e-41 172.6 123 71.5
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 5.4e-41 172.2 126 70.6
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 9.2e-41 171.4 123 72.4
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 6.0e-40 168.7 123 69.9
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 3.0e-39 166.4 125 68.0
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 5.6e-38 162.2 159 56.0
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 3.6e-37 159.5 125 65.6
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 1.4e-36 157.5 126 69.8
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 1.3e-34 151.0 108 71.3
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 1.3e-34 151.0 108 71.3
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 1.3e-34 151.0 123 67.5
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 1.4e-33 147.5 108 70.4
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 4.1e-33 146.0 115 60.9
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 5.1e-31 139.0 103 68.9
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 5.4e-25 119.0 123 50.4
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 3.5e-24 116.3 72 81.9
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 6.6e-23 112.1 123 49.6
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 1.5e-19 100.9 69 72.5
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 3.8e-18 96.3 125 44.0
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 1.9e-17 94.0 121 44.6
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 7.8e-16 88.6 58 72.4
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 8.7e-15 85.1 58 70.7
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 5.3e-12 75.9 47 83.0
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 3.8e-10 69.7 106 38.7
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 3.2e-09 66.6 45 71.1
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 7.1e-09 65.5 44 68.2
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 9.3e-09 65.1 45 66.7
BolC3t13192H Brassica oleracea HOM05D006391 ORTHO05D007767 5.6e-06 55.8 79 41.8


User provided reference genes

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