Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p031165 Quercus lobata HOM05D000129 ORTHO05D011232 3.3e-86 321.6 156 100.0
QL07p046196 Quercus lobata HOM05D002337 ORTHO05D002412 1.9e-33 146.4 78 88.5
QL02p064569 Quercus lobata HOM05D000129 ORTHO05D000144 9.1e-12 74.3 62 61.3
CiPaw.08G031500 Carya illinoinensis HOM05D000129 ORTHO05D000144 2.6e-11 72.8 90 53.3
QL08p058656 Quercus lobata HOM05D000292 ORTHO05D000172 2.6e-11 72.8 43 74.4
Cpa.g.sc115.64 Carica papaya HOM05D000129 ORTHO05D000144 5.9e-11 71.6 90 48.9
Duzib170G0665 Durio zibethinus HOM05D000129 ORTHO05D000144 5.9e-11 71.6 92 47.8
TAR626G1733 Trochodendron aralioides HOM05D000129 ORTHO05D000144 7.7e-11 71.2 90 51.1
Cfa013468 Carpinus fangiana HOM05D000129 ORTHO05D000144 1.7e-10 70.1 98 46.9
Haze_22045 Corylus avellana HOM05D000129 ORTHO05D000144 3.8e-10 68.9 101 45.5
Dinv41196 Davidia involucrata HOM05D000129 ORTHO05D000144 3.8e-10 68.9 92 46.7
Eucgr.C02215 Eucalyptus grandis HOM05D000129 ORTHO05D000144 5.0e-10 68.6 101 44.6
Gohir.A08G017200 Gossypium hirsutum HOM05D000129 ORTHO05D000144 6.5e-10 68.2 92 45.7
Gohir.D08G027700 Gossypium hirsutum HOM05D000129 ORTHO05D000144 6.5e-10 68.2 92 45.7
Gorai.004G024800 Gossypium raimondii HOM05D000129 ORTHO05D000144 6.5e-10 68.2 92 45.7
Thecc.09G191600 Theobroma cacao HOM05D000129 ORTHO05D000144 1.1e-09 67.4 92 45.7
CiPaw.07G199000 Carya illinoinensis HOM05D000129 ORTHO05D000144 1.9e-09 66.6 92 44.6
BcaC09g51767 Brassica carinata HOM05D000129 ORTHO05D011232 4.2e-09 65.5 91 44.0
Ciclev10024770m.g Citrus clementina HOM05D000129 ORTHO05D000144 4.2e-09 65.5 90 48.9
Manes.14G162600 Manihot esculenta HOM05D000129 ORTHO05D000144 4.2e-09 65.5 90 44.4
TWI34G1012 Tripterygium wilfordii HOM05D000129 ORTHO05D000144 4.2e-09 65.5 61 52.5
FvH4_6g37190 Fragaria vesca HOM05D000129 ORTHO05D000144 7.2e-09 64.7 85 41.2
FAN02G2857 Fragaria x ananassa HOM05D000129 ORTHO05D000144 7.2e-09 64.7 89 47.2
FAN05G5742 Fragaria x ananassa HOM05D000129 ORTHO05D000144 7.2e-09 64.7 85 41.2
FAN09G4749 Fragaria x ananassa HOM05D000129 ORTHO05D000144 7.2e-09 64.7 89 47.2
FAN14G5800 Fragaria x ananassa HOM05D000129 ORTHO05D000144 7.2e-09 64.7 89 47.2
Solyc03g123890.4 Solanum lycopersicum HOM05D000129 ORTHO05D000144 7.2e-09 64.7 86 41.9
Sopen03g041630 Solanum pennellii HOM05D000129 ORTHO05D000144 7.2e-09 64.7 86 41.9
arahy.Tifrunner.gnm1.ann1.6QQ74H Arachis hypogaea HOM05D000129 ORTHO05D011232 9.4e-09 64.3 102 42.2
Glyma.15G167500 Glycine max HOM05D000129 ORTHO05D000144 1.2e-08 63.9 92 45.7
arahy.Tifrunner.gnm1.ann1.GJ0FTP Arachis hypogaea HOM05D000129 ORTHO05D000144 1.6e-08 63.5 102 42.2
arahy.Tifrunner.gnm1.ann1.Z0JMUR Arachis hypogaea HOM05D000129 ORTHO05D000144 1.6e-08 63.5 102 42.2
Ciclev10007305m.g Citrus clementina HOM05D000129 ORTHO05D000144 1.6e-08 63.5 89 47.2
Glyma.09G061200 Glycine max HOM05D000129 ORTHO05D000144 1.6e-08 63.5 92 45.7
HanXRQChr10g0309001 Helianthus annuus HOM05D000129 ORTHO05D000144 1.6e-08 63.5 94 44.7
arahy.Tifrunner.gnm1.ann1.A74HRV Arachis hypogaea HOM05D000129 ORTHO05D000144 2.1e-08 63.2 73 45.2
Dinv25468 Davidia involucrata HOM05D000129 ORTHO05D000144 2.1e-08 63.2 101 42.6
CiPaw.02G049100 Carya illinoinensis HOM05D000129 ORTHO05D000144 2.7e-08 62.8 90 44.4
Atru.chr7.923 Acer truncatum HOM05D000129 ORTHO05D000144 3.6e-08 62.4 90 42.2
Lj4g0004959 Lotus japonicus HOM05D000129 ORTHO05D000144 3.6e-08 62.4 90 43.3
Prupe.1G072600 Prunus persica HOM05D000129 ORTHO05D000144 3.6e-08 62.4 91 47.3
VMungo1309G0658 Vigna mungo HOM05D000129 ORTHO05D000144 3.6e-08 62.4 92 45.7
Lalb_Chr08g0231991 Lupinus albus HOM05D000129 ORTHO05D000144 4.7e-08 62.0 95 46.3
MD13G1241000 Malus domestica HOM05D000129 ORTHO05D000144 4.7e-08 62.0 93 44.1
Phvul.009G234600 Phaseolus vulgaris HOM05D000129 ORTHO05D000144 4.7e-08 62.0 92 45.7
Potri.006G072900 Populus trichocarpa HOM05D000129 ORTHO05D000144 4.7e-08 62.0 92 45.7
GSVIVG01029283001 Vitis vinifera HOM05D000129 ORTHO05D000144 4.7e-08 62.0 90 43.3
BraA01t00776Z Brassica rapa HOM05D000129 ORTHO05D000144 8.0e-08 61.2 91 42.9
CANSAT01G0701 Cannabis sativa HOM05D000129 ORTHO05D000144 8.0e-08 61.2 92 46.7
ECA234G3457 Erigeron canadensis HOM05D000129 ORTHO05D000144 8.0e-08 61.2 92 45.7
Lalb_Chr23g0276721 Lupinus albus HOM05D000129 ORTHO05D000144 8.0e-08 61.2 95 44.2
A01p08280 Brassica napus HOM05D000129 ORTHO05D000144 1.0e-07 60.8 91 42.9
CANSAT01G0630 Cannabis sativa HOM05D000129 ORTHO05D000144 1.0e-07 60.8 95 43.2
Sabra06G0054300 Salix brachista HOM05D000129 ORTHO05D000144 1.0e-07 60.8 92 45.7
HanXRQChr06g0181401 Helianthus annuus HOM05D000129 ORTHO05D000144 1.4e-07 60.5 92 44.6
Sc12g0011070 Simmondsia chinensis HOM05D000129 ORTHO05D000144 1.4e-07 60.5 92 45.7
Dinv00355 Davidia involucrata HOM05D000129 ORTHO05D011232 1.8e-07 60.1 92 44.6
Dinv20352 Davidia involucrata HOM05D000129 ORTHO05D000144 1.8e-07 60.1 92 44.6
Eucgr.C00095 Eucalyptus grandis HOM05D000129 ORTHO05D000144 1.8e-07 60.1 50 58.0
Gohir.A05G113800 Gossypium hirsutum HOM05D000129 ORTHO05D000144 1.8e-07 60.1 90 45.6
TAR625G0849 Trochodendron aralioides HOM05D000129 ORTHO05D000144 1.8e-07 60.1 90 45.6
FAN12G3374 Fragaria x ananassa HOM05D000129 ORTHO05D000144 2.3e-07 59.7 93 44.1
Lj6g0025922 Lotus japonicus HOM05D000129 ORTHO05D000144 2.3e-07 59.7 104 42.3
MD09G1160300 Malus domestica HOM05D000129 ORTHO05D000144 2.3e-07 59.7 85 40.0
GSVIVG01016158001 Vitis vinifera HOM05D000129 ORTHO05D000144 2.3e-07 59.7 90 38.9
MSTRG.19361 Avicennia marina HOM05D000129 ORTHO05D000144 3.0e-07 59.3 95 41.1
Nitab4.5_0001691g0150 Nicotiana tabacum HOM05D000129 ORTHO05D000144 3.0e-07 59.3 86 39.5
PGR031G1211 Punica granatum HOM05D000129 ORTHO05D000144 3.0e-07 59.3 90 43.3
Sed0019651 Sechium edule HOM05D000129 ORTHO05D000144 3.0e-07 59.3 91 45.1
C07p57340 Brassica napus HOM05D000129 ORTHO05D000144 4.0e-07 58.9 91 42.9
BolC7t46203H Brassica oleracea HOM05D000129 ORTHO05D000144 4.0e-07 58.9 91 42.9
CiPaw.07G198800 Carya illinoinensis HOM05D000129 ORTHO05D000144 4.0e-07 58.9 102 41.2
FAN22G1460 Fragaria x ananassa HOM05D000129 ORTHO05D000144 4.0e-07 58.9 60 50.0
Lj5A610T24 Lonicera japonica HOM05D000129 ORTHO05D011232 4.0e-07 58.9 92 43.5
Lj9A541T96 Lonicera japonica HOM05D000129 ORTHO05D000144 4.0e-07 58.9 102 42.2
MD16G1246100 Malus domestica HOM05D000129 ORTHO05D000144 4.0e-07 58.9 93 44.1
MD17G1146100 Malus domestica HOM05D000129 ORTHO05D000144 4.0e-07 58.9 85 38.8
Peaxi162Scf00038g02537 Petunia axillaris HOM05D000129 ORTHO05D000144 4.0e-07 58.9 86 39.5
Sp7g27710 Schrenkiella parvula HOM05D000129 ORTHO05D000144 4.0e-07 58.9 91 41.8
AL7G22350 Arabidopsis lyrata HOM05D000129 ORTHO05D000144 5.2e-07 58.5 91 42.9
A03p59320 Brassica napus HOM05D000129 ORTHO05D000144 5.2e-07 58.5 92 42.4
BraA03t14989Z Brassica rapa HOM05D000129 ORTHO05D000144 5.2e-07 58.5 92 42.4
CARHR237800 Cardamine hirsuta HOM05D000129 ORTHO05D000144 5.2e-07 58.5 91 41.8
DCAR_014677 Daucus carota HOM05D000129 ORTHO05D000144 5.2e-07 58.5 99 44.4
Migut.I01179 Erythranthe guttata HOM05D000129 ORTHO05D000144 5.2e-07 58.5 85 40.0
Manes.06G017700 Manihot esculenta HOM05D000129 ORTHO05D000144 5.2e-07 58.5 90 43.3
CSS0000883 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D000144 6.7e-07 58.2 85 41.2
CSS0027052 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D000144 6.7e-07 58.2 85 41.2
FAN07G1214 Fragaria x ananassa HOM05D000129 ORTHO05D000144 6.7e-07 58.2 96 41.7
Lsat_1_v5_gn_5_84040 Lactuca sativa HOM05D000129 ORTHO05D000144 6.7e-07 58.2 92 44.6
Medtr2g038310 Medicago truncatula HOM05D000129 ORTHO05D000144 6.7e-07 58.2 107 39.3
QL05p082573 Quercus lobata HOM05D000129 ORTHO05D000144 6.7e-07 58.2 85 40.0
HPP92_020629 Vanilla planifolia HOM05D000129 ORTHO05D000144 6.7e-07 58.2 104 44.2
Carub.0007s1075 Capsella rubella HOM05D000129 ORTHO05D000144 8.8e-07 57.8 91 41.8
ClCG09G001550 Citrullus lanatus HOM05D000129 ORTHO05D000144 8.8e-07 57.8 90 43.3
Nn8g40669 Nelumbo nucifera HOM05D000129 ORTHO05D000144 8.8e-07 57.8 92 45.7
Nitab4.5_0004695g0010 Nicotiana tabacum HOM05D000129 ORTHO05D000144 8.8e-07 57.8 85 38.8
Oeu029604.1 Olea europaea HOM05D000129 ORTHO05D000144 8.8e-07 57.8 89 38.2
RcHm_v2.0_Chr2g0149841 Rosa chinensis HOM05D000129 ORTHO05D000144 8.8e-07 57.8 85 38.8
SGA_v2.0_scaffold122G33288 Striga asiatica HOM05D000129 ORTHO05D000144 8.8e-07 57.8 85 41.2
TWI12G1121 Tripterygium wilfordii HOM05D000129 ORTHO05D000144 8.8e-07 57.8 92 44.6
MSTRG.10892 Avicennia marina HOM05D000129 ORTHO05D000144 1.2e-06 57.4 85 42.4
BcaNung00500 Brassica carinata HOM05D000129 ORTHO05D000144 1.2e-06 57.4 91 41.8
Ca_02126_v3 Cicer arietinum L. HOM05D000129 ORTHO05D000144 1.2e-06 57.4 104 40.4
Rhsim03G0267700 Rhododendron simsii HOM05D000129 ORTHO05D000144 1.2e-06 57.4 95 43.2
Sabra18G0114300 Salix brachista HOM05D000129 ORTHO05D000144 1.2e-06 57.4 90 41.1
Sed0004766 Sechium edule HOM05D000129 ORTHO05D000144 1.2e-06 57.4 101 39.6
SGA_v2.0_scaffold71G24007 Striga asiatica HOM05D000129 ORTHO05D000144 1.2e-06 57.4 85 41.2
CiPaw.02G048500 Carya illinoinensis HOM05D000129 ORTHO05D000144 1.5e-06 57.0 101 40.6
Migut.K01255 Erythranthe guttata HOM05D000129 ORTHO05D011232 1.5e-06 57.0 83 37.3
Thhalv10024281m.g Eutrema salsugineum HOM05D000129 ORTHO05D000144 1.5e-06 57.0 91 42.9
Oeu040345.1 Olea europaea HOM05D000129 ORTHO05D000144 1.5e-06 57.0 94 40.4
TPR.G5379 Trifolium pratense HOM05D000129 ORTHO05D011232 1.5e-06 57.0 79 41.8
ClCG11G011560 Citrullus lanatus HOM05D000129 ORTHO05D000144 2.0e-06 56.6 91 41.8
Duzib235G0196 Durio zibethinus HOM05D000129 ORTHO05D000144 2.0e-06 56.6 92 43.5
FAN17G2302 Fragaria x ananassa HOM05D000129 ORTHO05D000144 2.0e-06 56.6 96 40.6
MD16G1245600 Malus domestica HOM05D000129 ORTHO05D000144 2.0e-06 56.6 53 52.8
TPR.G2545 Trifolium pratense HOM05D000129 ORTHO05D000144 2.0e-06 56.6 105 41.9
Hma1.2p1_0235F.1_g098780 Hydrangea macrophylla HOM05D000129 ORTHO05D000144 2.6e-06 56.2 107 38.3
TAR369G0135 Trochodendron aralioides HOM05D000129 ORTHO05D000144 2.6e-06 56.2 103 42.7
Gorai.009G118300 Gossypium raimondii HOM05D000129 ORTHO05D000144 3.3e-06 55.8 92 43.5
Lalb_Chr04g0264661 Lupinus albus HOM05D000129 ORTHO05D000144 3.3e-06 55.8 104 39.4
THA.LOC104814642 Tarenaya hassleriana HOM05D000129 ORTHO05D000144 3.3e-06 55.8 91 41.8
Manes.03G082162 Manihot esculenta HOM05D000129 ORTHO05D000144 4.4e-06 55.5 105 41.9
AT4G29900 Arabidopsis thaliana HOM05D000129 ORTHO05D000144 5.7e-06 55.1 91 40.7
Gohir.D05G114200 Gossypium hirsutum HOM05D000129 ORTHO05D000144 5.7e-06 55.1 92 43.5
PGR142G2354 Punica granatum HOM05D000129 ORTHO05D000144 5.7e-06 55.1 90 42.2
Actinidia21873 Actinidia chinensis HOM05D000129 ORTHO05D000144 7.5e-06 54.7 91 38.5
Aa31LG3G13010 Aethionema arabicum HOM05D000129 ORTHO05D000144 7.5e-06 54.7 96 36.5
CAN.G790.21 Capsicum annuum HOM05D000129 ORTHO05D000144 7.5e-06 54.7 86 37.2
FvH4_4g06940 Fragaria vesca HOM05D000129 ORTHO05D000144 7.5e-06 54.7 90 42.2
RcHm_v2.0_Chr4g0398951 Rosa chinensis HOM05D000129 ORTHO05D000144 7.5e-06 54.7 90 41.1
Zm00001eb233610 Zea mays HOM05D000129 ORTHO05D000144 7.5e-06 54.7 101 38.6
CsaV3_2G008960 Cucumis sativus L. HOM05D000129 ORTHO05D000144 9.7e-06 54.3 91 40.7
CsaV3_7G033780 Cucumis sativus L. HOM05D000129 ORTHO05D000144 9.7e-06 54.3 90 41.1
Migut.H02549 Erythranthe guttata HOM05D000129 ORTHO05D011232 9.7e-06 54.3 52 53.8
RcHm_v2.0_Chr4g0398891 Rosa chinensis HOM05D000129 ORTHO05D000144 9.7e-06 54.3 90 41.1


User provided reference genes

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