Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 3.4e-158 561.6 284 100.0
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 3.0e-122 442.2 284 78.5
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 4.2e-116 421.8 286 75.5
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.6e-115 419.9 286 74.8
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.6e-115 419.9 286 74.5
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 6.1e-115 417.9 284 73.6
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.8e-114 416.4 286 73.8
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 1.8e-114 416.4 286 74.1
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 3.0e-114 415.6 288 74.3
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 8.8e-114 414.1 286 74.5
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 1.2e-113 413.7 286 73.1
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 2.6e-113 412.5 287 74.2
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 8.3e-112 407.5 287 72.5
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.8e-111 406.4 287 72.5
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 5.4e-111 404.8 287 72.1
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.2e-110 403.7 285 72.3
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 5.9e-110 401.4 287 71.1
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.3e-109 400.2 253 79.4
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.9e-109 399.1 287 71.8
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.9e-109 399.1 286 71.0
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 5.0e-109 398.3 286 70.6
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 5.0e-109 398.3 286 69.9
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 8.5e-109 397.5 286 71.0
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.2e-107 393.7 286 71.0
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 1.6e-107 393.3 284 67.3
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 2.7e-107 392.5 288 70.5
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.0e-106 390.6 287 68.6
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 1.8e-106 389.8 288 70.1
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 5.2e-106 388.3 287 68.6
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 6.8e-106 387.9 286 71.0
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 6.8e-106 387.9 284 66.9
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.6e-105 386.0 275 73.1
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 2.6e-105 386.0 284 66.2
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 3.4e-105 385.6 286 71.0
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 9.8e-105 384.0 285 66.3
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 6.3e-104 381.3 284 67.3
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-103 380.6 287 67.9
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 1.4e-103 380.2 255 74.9
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.8e-103 379.8 257 73.2
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.4e-103 379.4 287 67.9
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 2.0e-102 376.3 284 65.1
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 4.5e-102 375.2 295 65.1
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.3e-101 373.6 277 69.7
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 2.3e-101 372.9 296 66.2
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 2.9e-101 372.5 282 68.8
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 3.8e-101 372.1 282 66.7
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 1.9e-100 369.8 286 67.1
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.2e-99 367.1 284 66.9
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 4.7e-99 365.2 266 69.2
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 1.4e-98 363.6 291 65.6
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 1.8e-98 363.2 261 70.5
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 3.0e-98 362.5 286 64.0
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 1.2e-97 360.5 285 65.3
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 2.6e-97 359.4 279 67.4
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 2.6e-97 359.4 291 65.3
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 4.4e-97 358.6 286 65.4
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 9.8e-97 357.5 288 64.9
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 9.8e-97 357.5 297 64.0
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 9.8e-97 357.5 264 67.8
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 1.3e-96 357.1 248 71.4
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.7e-96 356.7 267 67.8
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 3.7e-96 355.5 288 64.2
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 3.7e-96 355.5 284 63.7
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 1.8e-95 353.2 288 63.5
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 3.2e-95 352.4 268 66.8
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 7.0e-95 351.3 292 63.7
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 7.0e-95 351.3 292 63.7
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 9.2e-95 350.9 287 62.7
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.6e-94 350.1 285 64.6
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.6e-94 350.1 286 62.6
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 2.0e-94 349.7 290 63.1
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 2.7e-94 349.4 270 68.1
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.7e-94 349.4 292 62.7
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 4.6e-94 348.6 286 63.6
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 2.3e-93 346.3 224 76.3
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 3.0e-93 345.9 289 62.6
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 3.0e-93 345.9 259 68.0
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.1e-92 344.0 291 64.3
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 1.1e-92 344.0 239 69.0
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.9e-92 343.2 268 63.8
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 4.3e-92 342.0 268 63.8
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 5.6e-92 341.7 268 64.6
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.6e-91 340.1 266 65.8
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.1e-91 339.7 255 67.8
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.8e-90 336.7 217 74.7
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 8.9e-90 334.3 294 63.6
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.7e-88 330.1 313 58.5
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.9e-87 326.6 249 67.9
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 5.4e-87 325.1 243 67.9
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.0e-86 323.2 246 67.9
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 4.6e-86 322.0 247 66.0
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 6.0e-86 321.6 267 62.9
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 7.8e-86 321.2 270 62.6
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 4.3e-84 315.5 267 61.8
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 3.1e-82 309.3 281 60.5
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 6.8e-82 308.1 240 69.6
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.4e-79 300.4 288 57.6
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 5.4e-79 298.5 259 56.8
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 2.1e-75 286.6 241 63.5
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 5.2e-74 282.0 174 78.7
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 6.8e-74 281.6 182 74.7
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 3.4e-73 279.3 230 57.8
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 7.8e-70 268.1 323 48.0
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 8.6e-69 264.6 221 56.6
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 2.8e-67 259.6 173 72.3
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.4e-66 256.5 225 54.7
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 5.2e-66 255.4 269 50.6
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-63 247.7 267 52.8
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 5.4e-63 245.4 226 51.3
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.5e-57 227.3 186 58.1
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.6e-57 226.5 251 45.8
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 7.1e-55 218.4 254 46.5
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.6e-54 217.2 233 55.4
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 1.6e-54 217.2 252 47.2
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 3.3e-52 209.5 168 64.9
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 5.3e-50 202.2 231 52.4
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.3e-45 187.6 112 81.2
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.4e-39 167.5 130 68.5
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 3.1e-34 149.8 223 38.6
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 4.5e-33 146.0 128 55.5
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 1.6e-30 137.5 130 56.2
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.0e-29 134.8 188 41.0
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 2.5e-28 130.2 85 76.5
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 2.8e-27 126.7 81 71.6
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 2.4e-26 123.6 81 70.4
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 3.1e-26 123.2 81 69.1
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 2.5e-23 113.6 82 68.3
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 8.2e-19 98.6 170 34.1
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.1e-18 98.2 104 51.9
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.1e-18 98.2 104 51.9
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.1e-18 98.2 195 32.3
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 1.4e-18 97.8 104 51.0
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.8e-18 97.4 104 51.9
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.1e-18 96.3 104 51.0
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 5.9e-17 92.4 80 62.5
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 1.9e-15 87.4 111 45.0
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 1.5e-12 77.8 52 75.0
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 4.1e-10 69.7 54 64.8
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 2.0e-09 67.4 129 34.1
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 3.5e-09 66.6 61 54.1
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 7.7e-09 65.5 60 55.0


User provided reference genes

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