Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 7.1e-118 427.2 201 100.0
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 2.0e-88 329.3 170 90.6
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 7.2e-86 320.9 170 91.2
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 2.2e-82 309.3 172 87.8
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 2.4e-65 252.7 172 68.0
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 7.0e-65 251.1 189 68.3
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 1.0e-63 247.3 172 67.4
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 1.7e-63 246.5 172 68.0
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 4.2e-62 241.9 172 65.1
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 3.6e-61 238.8 206 57.3
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.8e-60 236.5 193 56.5
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 4.0e-60 235.3 194 57.7
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 6.8e-60 234.6 172 63.4
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 1.2e-59 233.8 173 63.0
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 7.5e-59 231.1 173 63.0
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 1.7e-58 229.9 172 62.2
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 6.3e-58 228.0 172 61.0
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.4e-57 226.1 172 60.5
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 9.2e-57 224.2 172 61.6
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 2.0e-56 223.0 124 87.1
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 5.0e-55 218.4 170 59.4
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 2.5e-54 216.1 171 59.1
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 2.5e-54 216.1 170 58.2
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 2.5e-54 216.1 170 58.2
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 7.3e-54 214.5 170 58.2
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 7.3e-54 214.5 170 58.2
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 1.6e-53 213.4 170 57.6
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 3.6e-53 212.2 170 57.6
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 1.4e-52 210.3 185 59.5
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 4.0e-52 208.8 171 56.7
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 4.0e-52 208.8 170 58.2
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 8.9e-52 207.6 193 50.3
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 8.9e-52 207.6 170 57.1
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 2.0e-51 206.5 170 57.6
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 2.0e-51 206.5 185 53.0
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 5.8e-51 204.9 170 57.6
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 5.8e-51 204.9 185 53.0
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 7.5e-51 204.5 171 55.0
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 9.8e-51 204.1 170 56.5
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 9.8e-51 204.1 170 57.1
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 9.8e-51 204.1 173 57.8
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 1.7e-50 203.4 170 55.9
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.2e-50 203.0 173 56.1
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.2e-50 203.0 182 57.1
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 4.9e-50 201.8 171 54.4
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 8.3e-50 201.1 170 57.1
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 2.4e-49 199.5 171 54.4
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 9.2e-49 197.6 171 55.0
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 1.2e-48 197.2 174 54.0
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 2.0e-48 196.4 172 59.3
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 6.0e-48 194.9 157 55.4
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 7.8e-48 194.5 170 58.8
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 7.8e-48 194.5 171 53.8
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 1.0e-47 194.1 170 58.8
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.0e-47 194.1 179 53.1
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 2.3e-47 193.0 157 54.8
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 6.6e-47 191.4 181 51.9
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 8.6e-47 191.0 166 56.0
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.5e-46 190.3 183 49.2
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 7.3e-46 188.0 170 51.2
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 7.3e-46 188.0 171 53.2
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 9.5e-46 187.6 170 52.9
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 2.1e-45 186.4 181 51.4
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 2.1e-45 186.4 158 56.3
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 6.2e-45 184.9 170 54.1
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 8.0e-45 184.5 159 56.6
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 6.8e-44 181.4 173 56.6
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 2.6e-43 179.5 161 52.2
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 2.6e-43 179.5 186 50.0
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 7.5e-43 177.9 170 51.2
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 7.5e-43 177.9 194 49.5
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 9.8e-43 177.6 157 52.9
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 1.7e-42 176.8 185 50.3
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 1.7e-42 176.8 171 52.0
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 2.9e-42 176.0 172 54.7
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 2.9e-42 176.0 157 55.4
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 3.7e-42 175.6 157 54.8
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 4.9e-42 175.3 171 52.6
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.3e-42 174.5 171 51.5
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.3e-42 174.5 171 51.5
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 8.3e-42 174.5 157 54.1
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 1.1e-41 174.1 157 52.9
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 1.1e-41 174.1 174 49.4
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 1.1e-41 174.1 174 49.4
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.4e-41 173.7 171 50.9
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 1.9e-41 173.3 171 48.5
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 2.4e-41 172.9 170 51.8
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 3.2e-41 172.6 158 57.0
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 1.6e-40 170.2 160 53.1
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 1.6e-40 170.2 197 46.2
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 3.5e-40 169.1 191 46.1
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 7.8e-40 167.9 168 50.6
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 5.1e-39 165.2 158 51.3
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 3.3e-38 162.5 141 57.4
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 9.5e-38 161.0 192 43.8
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 2.8e-37 159.5 173 49.1
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 2.3e-36 156.4 192 42.7
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 3.1e-36 156.0 247 38.1
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 3.4e-35 152.5 170 44.7
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 7.5e-35 151.4 170 46.5
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 2.2e-34 149.8 170 48.8
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 9.2e-33 144.4 215 39.1
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 6.6e-31 138.3 196 41.8
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 1.9e-30 136.7 150 46.7
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 1.6e-29 133.7 144 52.8
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 8.1e-29 131.3 184 38.6
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 6.8e-28 128.3 134 46.3
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 8.9e-28 127.9 180 38.9
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.2e-27 127.5 222 37.8
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.0e-27 126.7 125 49.6
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 1.7e-26 123.6 93 60.2
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 3.8e-26 122.5 92 60.9
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 2.3e-23 113.2 86 64.0
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 3.0e-23 112.8 120 48.3
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 1.2e-21 107.5 97 51.5
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 1.6e-21 107.1 77 64.9
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 1.8e-20 103.6 202 32.2
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 4.0e-20 102.4 109 49.5
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 4.0e-20 102.4 104 51.9
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 3.4e-19 99.4 184 32.1
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 5.8e-19 98.6 173 37.0
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 6.6e-15 85.1 46 76.1
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.3e-14 82.4 80 51.2
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 4.3e-14 82.4 144 36.8
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 6.2e-13 78.6 115 42.6
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 8.1e-13 78.2 54 66.7
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 3.1e-12 76.3 80 47.5
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.1e-12 76.3 46 71.7
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 4.5e-11 72.4 110 36.4
Oeu012237.1 Olea europaea HOM05D004964 ORTHO05D005918 4.5e-11 72.4 99 40.4
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 1.2e-08 64.3 45 64.4


User provided reference genes

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