Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p029156 Quercus lobata HOM05D001361 ORTHO05D005105 4.3e-29 131.0 82 100.0
CiPaw.05G107400 Carya illinoinensis HOM05D001361 ORTHO05D005105 9.0e-11 70.1 80 52.5
CSS0035859 Camellia sinensis var. sinensis HOM05D001361 ORTHO05D005105 1.3e-09 66.2 44 77.3
Hma1.2p1_0065F.1_g035150 Hydrangea macrophylla HOM05D001361 ORTHO05D005105 1.7e-09 65.9 44 75.0
Gohir.D04G187700 Gossypium hirsutum HOM05D001361 ORTHO05D005105 2.2e-09 65.5 44 72.7
Gorai.012G180700 Gossypium raimondii HOM05D001361 ORTHO05D005105 2.2e-09 65.5 44 72.7
QL03p051832 Quercus lobata HOM05D001361 ORTHO05D005105 2.2e-09 65.5 44 79.5
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 3.8e-09 64.7 44 75.0
Cfa009384 Carpinus fangiana HOM05D001361 ORTHO05D005105 5.0e-09 64.3 44 72.7
Duzib248G0082 Durio zibethinus HOM05D001361 ORTHO05D005105 5.0e-09 64.3 80 47.5
SGA_v2.0_scaffold7G04048 Striga asiatica HOM05D001361 ORTHO05D005105 5.0e-09 64.3 44 72.7
Duzib251G0004 Durio zibethinus HOM05D001361 ORTHO05D005105 8.4e-09 63.5 44 72.7
Gohir.A04G141200 Gossypium hirsutum HOM05D001361 ORTHO05D005105 8.4e-09 63.5 44 72.7
TAR629G2391 Trochodendron aralioides HOM05D001361 ORTHO05D005105 8.4e-09 63.5 47 70.2
TWI75G0976 Tripterygium wilfordii HOM05D001361 ORTHO05D005105 1.4e-08 62.8 44 70.5
MSTRG.8019 Avicennia marina HOM05D001361 ORTHO05D005105 1.9e-08 62.4 44 70.5
TAR371G0443 Trochodendron aralioides HOM05D001361 ORTHO05D005105 1.9e-08 62.4 47 68.1
Manes.12G008800 Manihot esculenta HOM05D001361 ORTHO05D005105 2.5e-08 62.0 80 46.2
Nitab4.5_0008235g0020 Nicotiana tabacum HOM05D001361 ORTHO05D005105 2.5e-08 62.0 44 72.7
Nitab4.5_0010664g0010 Nicotiana tabacum HOM05D001361 ORTHO05D005105 2.5e-08 62.0 44 72.7
SalBow1G2500 Salvia bowleyana HOM05D001361 ORTHO05D005105 2.5e-08 62.0 44 70.5
Thecc.02G202500 Theobroma cacao HOM05D001361 ORTHO05D005105 2.5e-08 62.0 44 68.2
GSVIVG01010524001 Vitis vinifera HOM05D001361 ORTHO05D005105 2.5e-08 62.0 44 75.0
MSTRG.486 Avicennia marina HOM05D001361 ORTHO05D005105 4.2e-08 61.2 44 68.2
BcaC05g26733 Brassica carinata HOM05D001361 ORTHO05D005105 4.2e-08 61.2 62 54.8
A09p38680 Brassica napus HOM05D001361 ORTHO05D005105 4.2e-08 61.2 62 56.5
BraA09t39376Z Brassica rapa HOM05D001361 ORTHO05D005105 4.2e-08 61.2 62 56.5
SalBow1G0997 Salvia bowleyana HOM05D001361 ORTHO05D005105 4.2e-08 61.2 44 70.5
TWI36G1404 Tripterygium wilfordii HOM05D001361 ORTHO05D005105 4.2e-08 61.2 47 68.1
Actinidia08055 Actinidia chinensis HOM05D001361 ORTHO05D005105 5.5e-08 60.8 44 65.9
Eucgr.B03519 Eucalyptus grandis HOM05D001361 ORTHO05D005105 5.5e-08 60.8 41 75.6
Nn3g16410 Nelumbo nucifera HOM05D001361 ORTHO05D005105 5.5e-08 60.8 47 66.0
Gorai.005G164400 Gossypium raimondii HOM05D001361 ORTHO05D005105 7.1e-08 60.5 77 45.5
Lj6A829G28 Lonicera japonica HOM05D001361 ORTHO05D005105 7.1e-08 60.5 44 70.5
Oeu004465.2 Olea europaea HOM05D001361 ORTHO05D005105 7.1e-08 60.5 39 76.9
Rhsim12G0024000 Rhododendron simsii HOM05D001361 ORTHO05D005105 7.1e-08 60.5 44 70.5
Solyc05g015820.4 Solanum lycopersicum HOM05D001361 ORTHO05D005105 7.1e-08 60.5 39 76.9
Sopen05g011440 Solanum pennellii HOM05D001361 ORTHO05D005105 7.1e-08 60.5 39 76.9
Duzib268G1250 Durio zibethinus HOM05D001361 ORTHO05D005105 9.3e-08 60.1 44 68.2
Gohir.D02G146800 Gossypium hirsutum HOM05D001361 ORTHO05D005105 9.3e-08 60.1 44 68.2
Nn4g22268 Nelumbo nucifera HOM05D001361 ORTHO05D005105 9.3e-08 60.1 58 53.4
CDE02G3199 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 1.2e-07 59.7 80 42.5
Potri.001G058700 Populus trichocarpa HOM05D001361 ORTHO05D005105 1.2e-07 59.7 47 66.0
Potri.003G169200 Populus trichocarpa HOM05D001361 ORTHO05D005105 1.2e-07 59.7 44 68.2
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 1.2e-07 59.7 44 68.2
Cc11_g17160 Coffea canephora HOM05D001361 ORTHO05D005105 1.6e-07 59.3 44 65.9
Atru.chr11.2355 Acer truncatum HOM05D001361 ORTHO05D005105 2.1e-07 58.9 45 71.1
Peaxi162Scf00023g02226 Petunia axillaris HOM05D001361 ORTHO05D005105 2.1e-07 58.9 44 70.5
Sabra01G0042200 Salix brachista HOM05D001361 ORTHO05D005105 2.1e-07 58.9 39 74.4
CAN.G1358.16 Capsicum annuum HOM05D001361 ORTHO05D005105 2.7e-07 58.5 44 68.2
Gohir.A03G124400 Gossypium hirsutum HOM05D001361 ORTHO05D005105 2.7e-07 58.5 44 65.9
BcaC01g01627 Brassica carinata HOM05D001361 ORTHO05D005105 3.5e-07 58.2 80 45.0
A08p26450 Brassica napus HOM05D001361 ORTHO05D005105 3.5e-07 58.2 80 45.0
C03p73600 Brassica napus HOM05D001361 ORTHO05D005105 3.5e-07 58.2 80 45.0
BolC3t19653H Brassica oleracea HOM05D001361 ORTHO05D005105 3.5e-07 58.2 80 45.0
BraA08t34597Z Brassica rapa HOM05D001361 ORTHO05D005105 3.5e-07 58.2 80 45.0
vmacro01051 Vaccinium macrocarpon HOM05D001361 ORTHO05D005105 3.5e-07 58.2 39 74.4
BcaB03g12068 Brassica carinata HOM05D001361 ORTHO05D005105 4.6e-07 57.8 80 42.5
Carub.0001s2579 Capsella rubella HOM05D001361 ORTHO05D005105 4.6e-07 57.8 80 41.2
CDE05G1789 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 4.6e-07 57.8 39 66.7
SGA_v2.0_scaffold114G31917 Striga asiatica HOM05D001361 ORTHO05D005105 4.6e-07 57.8 44 65.9
Actinidia30631 Actinidia chinensis HOM05D001361 ORTHO05D005105 6.1e-07 57.4 44 61.4
ClCG06G002090 Citrullus lanatus HOM05D001361 ORTHO05D005105 6.1e-07 57.4 39 71.8
Thhalv10008045m.g Eutrema salsugineum HOM05D001361 ORTHO05D005105 6.1e-07 57.4 80 43.8
Actinidia39801 Actinidia chinensis HOM05D001361 ORTHO05D005105 7.9e-07 57.0 44 65.9
Oeu006513.1 Olea europaea HOM05D001361 ORTHO05D005105 7.9e-07 57.0 43 65.1
EL10Ac6g13534 Beta vulgaris HOM05D001361 ORTHO05D005105 1.0e-06 56.6 39 69.2
EL10Ac6g15295 Beta vulgaris HOM05D001361 ORTHO05D005105 1.0e-06 56.6 39 69.2
C05p25960 Brassica napus HOM05D001361 ORTHO05D005105 1.0e-06 56.6 77 44.2
BolC5t31315H Brassica oleracea HOM05D001361 ORTHO05D005105 1.0e-06 56.6 77 44.2
DCAR_024667 Daucus carota HOM05D001361 ORTHO05D005105 1.0e-06 56.6 44 63.6
Sp1g23500 Schrenkiella parvula HOM05D001361 ORTHO05D005105 1.0e-06 56.6 44 63.6
AL1G40660 Arabidopsis lyrata HOM05D001361 ORTHO05D005105 1.3e-06 56.2 80 41.2
AT1G24267 Arabidopsis thaliana HOM05D001361 ORTHO05D005105 1.3e-06 56.2 80 41.2
A09p38670 Brassica napus HOM05D001361 ORTHO05D005105 1.3e-06 56.2 77 44.2
BraA09t39375Z Brassica rapa HOM05D001361 ORTHO05D005105 1.3e-06 56.2 77 44.2
BcaC05g26539 Brassica carinata HOM05D001361 ORTHO05D005105 1.8e-06 55.8 62 53.2
BolC5t31314H Brassica oleracea HOM05D001361 ORTHO05D005105 1.8e-06 55.8 62 53.2
arahy.Tifrunner.gnm1.ann1.M9HGBQ Arachis hypogaea HOM05D001361 ORTHO05D005105 2.3e-06 55.5 46 60.9
arahy.Tifrunner.gnm1.ann1.WMQ7N5 Arachis hypogaea HOM05D001361 ORTHO05D005105 2.3e-06 55.5 46 60.9
C05p25950 Brassica napus HOM05D001361 ORTHO05D005105 2.3e-06 55.5 80 43.8
Thhalv10008078m.g Eutrema salsugineum HOM05D001361 ORTHO05D005105 2.3e-06 55.5 44 61.4
HanXRQChr05g0128771 Helianthus annuus HOM05D001361 ORTHO05D005105 2.3e-06 55.5 41 68.3
Sp1g23510 Schrenkiella parvula HOM05D001361 ORTHO05D005105 2.3e-06 55.5 77 44.2
CDE05G0317 Ceratophyllum demersum HOM05D001361 ORTHO05D005105 3.9e-06 54.7 39 64.1
Psat3g188120 Pisum sativum HOM05D001361 ORTHO05D005105 3.9e-06 54.7 44 63.6
PGR102G1867 Punica granatum HOM05D001361 ORTHO05D005105 3.9e-06 54.7 39 66.7
Lalb_Chr17g0336401 Lupinus albus HOM05D001361 ORTHO05D005105 5.1e-06 54.3 39 71.8
Phvul.008G017700 Phaseolus vulgaris HOM05D001361 ORTHO05D005105 5.1e-06 54.3 44 65.9
Cpa.g.sc200.23 Carica papaya HOM05D001361 ORTHO05D005105 6.7e-06 53.9 44 61.4
CARHR026830 Cardamine hirsuta HOM05D001361 ORTHO05D005105 8.7e-06 53.5 77 41.6
Hund25479 Selenicereus undatus HOM05D001361 ORTHO05D005105 8.7e-06 53.5 39 66.7


User provided reference genes

Program Settings