Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p027579 Quercus lobata HOM05D005003 ORTHO05D337200 2.3e-47 191.8 90 100.0
Lalb_Chr11g0073941 Lupinus albus HOM05D005003 ORTHO05D006220 1.0e-07 60.1 50 58.0
Os03g0190900 Oryza sativa ssp. japonica HOM05D005003 ORTHO05D006220 2.3e-07 58.9 44 68.2
TAR625G1506 Trochodendron aralioides HOM05D005003 ORTHO05D006220 2.3e-07 58.9 46 60.9
Aqoxy6G00783 Aquilegia oxysepala HOM05D005003 ORTHO05D006220 3.0e-07 58.5 46 60.9
QL12p036782 Quercus lobata HOM05D005003 ORTHO05D006220 3.0e-07 58.5 45 62.2
vmacro21269 Vaccinium macrocarpon HOM05D005003 ORTHO05D006220 3.0e-07 58.5 62 50.0
arahy.Tifrunner.gnm1.ann1.T3BG7X Arachis hypogaea HOM05D005003 ORTHO05D006220 3.9e-07 58.2 46 58.7
Lalb_Chr08g0232881 Lupinus albus HOM05D005003 ORTHO05D006220 3.9e-07 58.2 62 46.8
Aa31LG6G8500 Aethionema arabicum HOM05D005003 ORTHO05D006220 5.1e-07 57.8 46 60.9
MD08G1182800 Malus domestica HOM05D005003 ORTHO05D006220 5.1e-07 57.8 46 58.7
Sc01g0000450 Simmondsia chinensis HOM05D005003 ORTHO05D006220 5.1e-07 57.8 91 38.5
TPR.G20790 Trifolium pratense HOM05D005003 ORTHO05D006220 5.1e-07 57.8 61 50.8
AT1G34630 Arabidopsis thaliana HOM05D005003 ORTHO05D006220 6.6e-07 57.4 46 60.9
arahy.Tifrunner.gnm1.ann1.DW6FDI Arachis hypogaea HOM05D005003 ORTHO05D006220 6.6e-07 57.4 46 58.7
Hma1.2p1_0575F.1_g181570 Hydrangea macrophylla HOM05D005003 ORTHO05D006220 6.6e-07 57.4 46 58.7
Psat1g137840 Pisum sativum HOM05D005003 ORTHO05D006220 6.6e-07 57.4 93 39.8
Ca_02288_v3 Cicer arietinum L. HOM05D005003 ORTHO05D006220 8.7e-07 57.0 46 60.9
DCAR_008735 Daucus carota HOM05D005003 ORTHO05D006220 8.7e-07 57.0 59 49.2
Lj6g0010535 Lotus japonicus HOM05D005003 ORTHO05D006220 8.7e-07 57.0 46 60.9
Medtr2g044600 Medicago truncatula HOM05D005003 ORTHO05D006220 8.7e-07 57.0 46 67.4
CANSAT25G3351 Cannabis sativa HOM05D005003 ORTHO05D006220 1.1e-06 56.6 46 58.7
Glyma.15G183500 Glycine max HOM05D005003 ORTHO05D006220 1.1e-06 56.6 46 58.7
Gorai.009G237000 Gossypium raimondii HOM05D005003 ORTHO05D006220 1.1e-06 56.6 91 39.6
SGA_v2.0_scaffold729G53525 Striga asiatica HOM05D005003 ORTHO05D006220 1.1e-06 56.6 46 58.7
AL1G49100 Arabidopsis lyrata HOM05D005003 ORTHO05D006220 1.5e-06 56.2 46 58.7
Carub.0001s3263 Capsella rubella HOM05D005003 ORTHO05D006220 1.5e-06 56.2 46 58.7
Thhalv10001817m.g Eutrema salsugineum HOM05D005003 ORTHO05D006220 1.5e-06 56.2 46 58.7
Lsat_1_v5_gn_6_103020 Lactuca sativa HOM05D005003 ORTHO05D006220 1.5e-06 56.2 59 57.6
MBI02_g35765_MAGBIO Magnolia biondii HOM05D005003 ORTHO05D006220 1.5e-06 56.2 61 52.5
Manes.18G067500 Manihot esculenta HOM05D005003 ORTHO05D006220 1.5e-06 56.2 46 58.7
Nn1g05355 Nelumbo nucifera HOM05D005003 ORTHO05D006220 1.5e-06 56.2 46 58.7
Phvul.009G222900 Phaseolus vulgaris HOM05D005003 ORTHO05D006220 1.5e-06 56.2 46 56.5
Sp1g29750 Schrenkiella parvula HOM05D005003 ORTHO05D006220 1.5e-06 56.2 46 58.7
VMungo1309G2656 Vigna mungo HOM05D005003 ORTHO05D006220 1.5e-06 56.2 46 56.5
Eucgr.B00022 Eucalyptus grandis HOM05D005003 ORTHO05D006220 1.9e-06 55.8 46 58.7
FvH4_5g37331 Fragaria vesca HOM05D005003 ORTHO05D006220 1.9e-06 55.8 46 58.7
FAN13G0908 Fragaria x ananassa HOM05D005003 ORTHO05D006220 1.9e-06 55.8 46 58.7
FAN18G2350 Fragaria x ananassa HOM05D005003 ORTHO05D006220 1.9e-06 55.8 46 58.7
Ah.05g169960 Amaranthus hybridus HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 58.7
EL10Ac1g01213 Beta vulgaris HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
BcaB03g13676 Brassica carinata HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
BcaC05g27758 Brassica carinata HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
A05p23910 Brassica napus HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
C05p37520 Brassica napus HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
BolC5t32493H Brassica oleracea HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
BraA05t21269Z Brassica rapa HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
Ciclev10003185m.g Citrus clementina HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 58.7
COL.COLO4_16399 Corchorus olitorius HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
Haze_22267 Corylus avellana HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 58.7
Dinv44775 Davidia involucrata HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
Gohir.A05G226300 Gossypium hirsutum HOM05D005003 ORTHO05D006220 2.5e-06 55.5 91 39.6
Gohir.A06G035800 Gossypium hirsutum HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
Gohir.D06G036300 Gossypium hirsutum HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
Gorai.010G040300 Gossypium raimondii HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
Oeu046301.1 Olea europaea HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
Rhsim06G0082100 Rhododendron simsii HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
RcHm_v2.0_Chr7g0238981 Rosa chinensis HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 58.7
SalBow7G4179 Salvia bowleyana HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
Hund16905 Selenicereus undatus HOM05D005003 ORTHO05D006220 2.5e-06 55.5 51 52.9
THA.LOC104816746 Tarenaya hassleriana HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 58.7
Thecc.08G106800 Theobroma cacao HOM05D005003 ORTHO05D006220 2.5e-06 55.5 46 56.5
Atru.chr13.1187 Acer truncatum HOM05D005003 ORTHO05D006220 3.3e-06 55.1 46 56.5
CARHR033930 Cardamine hirsuta HOM05D005003 ORTHO05D006220 3.3e-06 55.1 46 56.5
FAN08G0347 Fragaria x ananassa HOM05D005003 ORTHO05D006220 3.3e-06 55.1 46 58.7
HanXRQChr11g0327771 Helianthus annuus HOM05D005003 ORTHO05D006220 3.3e-06 55.1 46 60.9
ATR0782G104 Amborella trichopoda HOM05D005003 ORTHO05D006220 4.3e-06 54.7 45 57.8
MSTRG.24973 Avicennia marina HOM05D005003 ORTHO05D006220 4.3e-06 54.7 46 56.5
Lj4A723T22 Lonicera japonica HOM05D005003 ORTHO05D006220 4.3e-06 54.7 47 53.2
HPP92_027712 Vanilla planifolia HOM05D005003 ORTHO05D006220 4.3e-06 54.7 46 60.9
Actinidia10323 Actinidia chinensis HOM05D005003 ORTHO05D006220 5.6e-06 54.3 61 47.5
Cpa.g.sc36.131 Carica papaya HOM05D005003 ORTHO05D006220 5.6e-06 54.3 46 56.5
FAN04G0108 Fragaria x ananassa HOM05D005003 ORTHO05D006220 5.6e-06 54.3 46 58.7
MBI05_g37053_MAGBIO Magnolia biondii HOM05D005003 ORTHO05D006220 5.6e-06 54.3 46 56.5
Nn5g30108 Nelumbo nucifera HOM05D005003 ORTHO05D006220 5.6e-06 54.3 46 56.5
Cfa013635 Carpinus fangiana HOM05D005003 ORTHO05D006220 7.3e-06 53.9 46 54.3
Cc10_g07200 Coffea canephora HOM05D005003 ORTHO05D006220 7.3e-06 53.9 46 54.3
Gohir.A02G076300 Gossypium hirsutum HOM05D005003 ORTHO05D006220 7.3e-06 53.9 47 53.2
PGR044G0640 Punica granatum HOM05D005003 ORTHO05D006220 7.3e-06 53.9 46 54.3
unitig_37.g12958 Utricularia gibba HOM05D005003 ORTHO05D006220 7.3e-06 53.9 46 60.9
BcaC08g43771 Brassica carinata HOM05D005003 ORTHO05D006220 9.6e-06 53.5 46 58.7
A09p32030 Brassica napus HOM05D005003 ORTHO05D006220 9.6e-06 53.5 46 58.7
C06p11460 Brassica napus HOM05D005003 ORTHO05D006220 9.6e-06 53.5 46 58.7
BolC6t36281H Brassica oleracea HOM05D005003 ORTHO05D006220 9.6e-06 53.5 46 58.7
BraA09t38740Z Brassica rapa HOM05D005003 ORTHO05D006220 9.6e-06 53.5 46 58.7
AUR62027758 Chenopodium quinoa HOM05D005003 ORTHO05D006220 9.6e-06 53.5 91 36.3
AUR62038523 Chenopodium quinoa HOM05D005003 ORTHO05D006220 9.6e-06 53.5 91 36.3
ECA246G4896 Erigeron canadensis HOM05D005003 ORTHO05D006220 9.6e-06 53.5 46 56.5
Gohir.D02G083500 Gossypium hirsutum HOM05D005003 ORTHO05D006220 9.6e-06 53.5 47 53.2
Gohir.D05G229033 Gossypium hirsutum HOM05D005003 ORTHO05D006220 9.6e-06 53.5 46 58.7
Gorai.005G094100 Gossypium raimondii HOM05D005003 ORTHO05D006220 9.6e-06 53.5 47 53.2
Lj4A102G54 Lonicera japonica HOM05D005003 ORTHO05D006220 9.6e-06 53.5 60 45.0
PSO210G4886 Papaver somniferum HOM05D005003 ORTHO05D006220 9.6e-06 53.5 46 54.3
PSO447G0231 Papaver somniferum HOM05D005003 ORTHO05D006220 9.6e-06 53.5 46 54.3
TWI56G0498 Tripterygium wilfordii HOM05D005003 ORTHO05D006220 9.6e-06 53.5 46 54.3


User provided reference genes

Program Settings