Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 2.3e-61 238.8 126 100.0
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 9.8e-57 223.4 126 91.3
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 4.9e-56 221.1 126 89.7
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.4e-55 219.5 126 90.5
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.4e-55 219.5 126 90.5
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 3.2e-55 218.4 126 90.5
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 7.0e-55 217.2 126 89.7
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 7.0e-55 217.2 126 88.9
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 9.2e-55 216.9 126 88.1
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.2e-54 216.5 126 89.7
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 1.6e-54 216.1 126 88.9
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 2.0e-54 215.7 126 89.7
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.7e-54 215.3 126 87.3
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 2.7e-54 215.3 126 88.1
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 2.7e-54 215.3 126 88.1
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 4.6e-54 214.5 127 89.0
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 5.9e-54 214.2 126 88.1
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 5.9e-54 214.2 126 88.9
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.3e-53 213.0 125 87.2
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 1.7e-53 212.6 126 88.1
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 1.7e-53 212.6 123 89.4
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 1.7e-53 212.6 126 86.5
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 1.7e-53 212.6 126 87.3
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 2.3e-53 212.2 127 87.4
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 2.3e-53 212.2 126 88.1
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.3e-53 212.2 126 88.1
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.9e-53 211.8 126 86.5
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.9e-53 211.8 126 87.3
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 3.9e-53 211.5 126 87.3
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 6.6e-53 210.7 124 87.9
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 6.6e-53 210.7 126 87.3
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 6.6e-53 210.7 126 86.5
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 8.6e-53 210.3 126 86.5
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 8.6e-53 210.3 126 87.3
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 8.6e-53 210.3 126 87.3
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 1.1e-52 209.9 126 86.5
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 1.1e-52 209.9 126 86.5
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 1.5e-52 209.5 126 87.3
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 1.5e-52 209.5 127 87.4
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.5e-52 209.5 126 86.5
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.5e-52 209.5 127 88.2
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 1.5e-52 209.5 126 85.7
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.5e-52 209.5 126 84.9
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 1.9e-52 209.1 126 87.3
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 2.5e-52 208.8 126 86.5
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 3.3e-52 208.4 127 87.4
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 4.3e-52 208.0 124 86.3
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 4.3e-52 208.0 122 88.5
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 5.6e-52 207.6 125 84.8
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 5.6e-52 207.6 126 86.5
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 5.6e-52 207.6 126 84.9
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 9.5e-52 206.8 122 88.5
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.2e-51 206.5 126 84.1
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 1.6e-51 206.1 125 84.0
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 1.6e-51 206.1 128 85.2
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 2.1e-51 205.7 125 84.0
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 4.7e-51 204.5 127 85.0
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 8.0e-51 203.8 128 83.6
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.4e-50 203.0 126 81.0
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 1.4e-50 203.0 128 83.6
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 1.8e-50 202.6 128 82.8
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 2.3e-50 202.2 126 82.5
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 2.3e-50 202.2 128 82.0
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 6.8e-50 200.7 128 83.6
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 8.9e-50 200.3 125 82.4
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 1.2e-49 199.9 126 79.4
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 1.2e-49 199.9 126 81.7
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 1.5e-49 199.5 125 81.6
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.5e-49 199.5 128 82.8
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 3.4e-49 198.4 125 80.0
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 3.4e-49 198.4 123 84.6
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 4.4e-49 198.0 126 80.2
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 5.8e-49 197.6 123 80.5
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 7.5e-49 197.2 128 80.5
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 9.8e-49 196.8 126 78.6
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 1.3e-48 196.4 121 85.1
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.3e-48 196.4 126 80.2
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 1.3e-48 196.4 121 84.3
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 3.7e-48 194.9 126 80.2
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 4.9e-48 194.5 126 79.4
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 1.9e-47 192.6 123 79.7
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 3.2e-47 191.8 126 79.4
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 3.2e-47 191.8 126 76.2
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 1.6e-46 189.5 126 77.0
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 4.6e-46 188.0 125 77.6
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 1.3e-45 186.4 126 74.6
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 6.6e-45 184.1 129 76.7
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 2.5e-44 182.2 129 76.0
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 2.5e-44 182.2 125 75.2
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 3.3e-44 181.8 124 75.0
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 5.6e-44 181.0 124 75.0
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 1.2e-43 179.9 130 73.8
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 4.7e-43 177.9 129 73.6
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 4.7e-43 177.9 130 70.8
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 4.7e-43 177.9 130 73.1
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 6.2e-43 177.6 130 70.8
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 6.2e-43 177.6 121 73.6
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 6.2e-43 177.6 130 70.8
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 8.1e-43 177.2 121 73.6
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 1.4e-42 176.4 117 76.9
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 1.8e-42 176.0 126 71.4
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 2.3e-42 175.6 117 76.9
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 2.3e-42 175.6 117 76.9
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 4.0e-42 174.9 126 74.6
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 5.2e-42 174.5 129 72.1
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 5.2e-42 174.5 126 72.2
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 3.4e-41 171.8 126 71.4
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 4.4e-41 171.4 128 74.2
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 3.7e-40 168.3 126 69.8
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 3.2e-39 165.2 128 71.9
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 3.2e-39 165.2 128 71.9
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 5.4e-39 164.5 126 68.3
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 2.7e-38 162.2 146 60.3
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 1.3e-37 159.8 126 66.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 3.0e-37 158.7 150 61.3
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 3.1e-34 148.7 126 63.5
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 6.8e-34 147.5 126 61.9
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 5.8e-33 144.4 87 88.5
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 2.2e-32 142.5 126 58.7
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 1.9e-31 139.4 90 78.9
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 2.7e-30 135.6 86 83.7
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 3.5e-30 135.2 86 81.4
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 1.0e-29 133.7 126 56.3
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 5.6e-28 127.9 132 54.5
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 4.0e-26 121.7 86 72.1
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 1.6e-22 109.8 120 47.5
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 9.0e-18 94.0 121 42.1
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 2.6e-17 92.4 120 45.0
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.7e-16 89.7 61 78.7
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 1.9e-12 76.3 46 87.0
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 4.3e-12 75.1 40 87.5
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 8.1e-11 70.9 55 69.1
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 1.5e-09 66.6 50 74.0
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.4e-07 60.1 31 87.1
Cfa022668 Carpinus fangiana HOM05D013358 ORTHO05D124219 1.2e-06 57.0 119 33.6
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 1.2e-06 57.0 41 65.9


User provided reference genes

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