Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p025768 Quercus lobata HOM05D006821 ORTHO05D008740 2.2e-208 728.8 385 100.0
Haze_04355 Corylus avellana HOM05D006821 ORTHO05D008740 2.3e-120 436.4 386 64.8
CiPaw.07G067000 Carya illinoinensis HOM05D006821 ORTHO05D008740 2.5e-119 433.0 381 64.8
Cfa006429 Carpinus fangiana HOM05D006821 ORTHO05D008740 2.6e-116 422.9 386 63.5
TAR633G1083 Trochodendron aralioides HOM05D006821 ORTHO05D008740 4.5e-113 412.1 382 60.2
TAR362G0286 Trochodendron aralioides HOM05D006821 ORTHO05D008740 2.8e-110 402.9 382 58.9
Hma1.2p1_0195F.1_g084560 Hydrangea macrophylla HOM05D006821 ORTHO05D008740 1.3e-104 384.0 386 55.7
Dinv10030 Davidia involucrata HOM05D006821 ORTHO05D008740 4.3e-103 379.0 368 58.4
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 5.6e-103 378.6 385 55.6
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 1.2e-102 377.5 385 54.8
RcHm_v2.0_Chr3g0451171 Rosa chinensis HOM05D006821 ORTHO05D008740 1.6e-102 377.1 385 56.1
Duzib177G0830 Durio zibethinus HOM05D006821 ORTHO05D008740 2.1e-102 376.7 380 53.7
CANSAT54G2350 Cannabis sativa HOM05D006821 ORTHO05D008740 3.1e-101 372.9 382 55.8
Prupe.6G342700 Prunus persica HOM05D006821 ORTHO05D008740 1.2e-100 370.9 382 57.3
Duzib128G0425 Durio zibethinus HOM05D006821 ORTHO05D008740 2.6e-100 369.8 385 52.5
FAN09G4578 Fragaria x ananassa HOM05D006821 ORTHO05D008740 5.8e-100 368.6 386 54.1
MD04G1224000 Malus domestica HOM05D006821 ORTHO05D008740 7.5e-100 368.2 382 56.3
MD12G1240800 Malus domestica HOM05D006821 ORTHO05D008740 1.3e-99 367.5 383 56.7
FvH4_6g02990 Fragaria vesca HOM05D006821 ORTHO05D008740 1.7e-99 367.1 386 53.9
FAN14G2672 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.7e-99 367.1 386 54.1
FAN02G2705 Fragaria x ananassa HOM05D006821 ORTHO05D008740 2.9e-99 366.3 386 53.9
Ciclev10001807m.g Citrus clementina HOM05D006821 ORTHO05D008740 6.4e-99 365.2 382 55.0
CSS0006427 Camellia sinensis var. sinensis HOM05D006821 ORTHO05D008740 1.1e-98 364.4 383 55.4
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 1.4e-98 364.0 382 53.1
Thecc.05G283900 Theobroma cacao HOM05D006821 ORTHO05D008740 1.9e-98 363.6 385 52.2
FAN05G1836 Fragaria x ananassa HOM05D006821 ORTHO05D008740 3.2e-98 362.8 386 53.6
Actinidia18357 Actinidia chinensis HOM05D006821 ORTHO05D008740 4.1e-98 362.5 385 54.8
COL.COLO4_15343 Corchorus olitorius HOM05D006821 ORTHO05D008740 7.0e-98 361.7 380 53.4
FAN05G4221 Fragaria x ananassa HOM05D006821 ORTHO05D008740 9.2e-98 361.3 386 53.4
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 9.2e-98 361.3 387 54.8
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 4.6e-97 359.0 382 53.9
Atru.chr2.810 Acer truncatum HOM05D006821 ORTHO05D008740 7.8e-97 358.2 387 52.5
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 3.3e-95 352.8 384 50.5
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 9.5e-95 351.3 384 50.5
Nitab4.5_0012228g0010 Nicotiana tabacum HOM05D006821 ORTHO05D008740 9.5e-95 351.3 385 49.1
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 1.6e-94 350.5 384 50.5
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 4.7e-94 349.0 383 53.0
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 6.2e-94 348.6 380 53.7
Cc02_g30600 Coffea canephora HOM05D006821 ORTHO05D008740 1.4e-93 347.4 382 51.8
Lj7A490T61 Lonicera japonica HOM05D006821 ORTHO05D008740 1.8e-93 347.1 389 54.0
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 1.5e-92 344.0 382 51.6
Sc20g0000300 Simmondsia chinensis HOM05D006821 ORTHO05D008740 2.0e-92 343.6 381 52.0
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 2.0e-92 343.6 386 50.5
MBI11_g26138_MAGBIO Magnolia biondii HOM05D006821 ORTHO05D008740 3.4e-92 342.8 382 52.1
TWI56G0757 Tripterygium wilfordii HOM05D006821 ORTHO05D008740 4.4e-92 342.4 385 50.9
ClCG02G016590 Citrullus lanatus HOM05D006821 ORTHO05D008740 7.5e-92 341.7 384 49.7
Peaxi162Scf00282g00328 Petunia axillaris HOM05D006821 ORTHO05D008740 1.7e-91 340.5 382 49.2
Hund22116 Selenicereus undatus HOM05D006821 ORTHO05D008740 2.9e-91 339.7 385 49.1
Sopen01g041020 Solanum pennellii HOM05D006821 ORTHO05D008740 1.1e-90 337.8 383 50.7
Oeu038441.1 Olea europaea HOM05D006821 ORTHO05D008740 2.4e-90 336.7 382 51.0
Solyc01g097350.4 Solanum lycopersicum HOM05D006821 ORTHO05D008740 4.1e-90 335.9 383 50.4
CAN.G134.100 Capsicum annuum HOM05D006821 ORTHO05D008740 7.1e-90 335.1 383 48.8
Sabra05G0046500 Salix brachista HOM05D006821 ORTHO05D008740 7.1e-90 335.1 435 47.6
AUR62004944 Chenopodium quinoa HOM05D006821 ORTHO05D008740 1.2e-89 334.3 382 48.7
AUR62001014 Chenopodium quinoa HOM05D006821 ORTHO05D008740 1.6e-89 334.0 382 49.2
Ca_09420_v3 Cicer arietinum L. HOM05D006821 ORTHO05D008740 2.7e-89 333.2 384 50.8
CsaV3_2G004180 Cucumis sativus L. HOM05D006821 ORTHO05D008740 2.7e-89 333.2 385 49.4
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 2.7e-89 333.2 383 51.7
Nitab4.5_0001592g0080 Nicotiana tabacum HOM05D006821 ORTHO05D008740 2.7e-89 333.2 399 46.9
Phvul.006G101500 Phaseolus vulgaris HOM05D006821 ORTHO05D008740 5.1e-88 328.9 389 50.6
VMungo0540G1649 Vigna mungo HOM05D006821 ORTHO05D008740 6.6e-88 328.6 389 50.4
Aqoxy2G03492 Aquilegia oxysepala HOM05D006821 ORTHO05D008740 1.9e-87 327.0 382 50.5
PSO461G0046 Papaver somniferum HOM05D006821 ORTHO05D008740 5.6e-87 325.5 382 49.2
PSO210G3560 Papaver somniferum HOM05D006821 ORTHO05D008740 7.3e-87 325.1 382 48.4
PSO210G3856 Papaver somniferum HOM05D006821 ORTHO05D008740 7.3e-87 325.1 382 48.4
ATR0606G003 Amborella trichopoda HOM05D006821 ORTHO05D008740 1.8e-85 320.5 382 50.3
Sed0012709 Sechium edule HOM05D006821 ORTHO05D008740 3.1e-85 319.7 383 48.3
Lalb_Chr04g0262251 Lupinus albus HOM05D006821 ORTHO05D008740 5.2e-85 318.9 383 47.5
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 8.9e-85 318.2 386 49.5
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 1.2e-84 317.8 381 49.1
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 1.1e-82 311.2 379 46.7
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 3.9e-80 302.8 385 49.4
EL10Ac4g09134 Beta vulgaris HOM05D006821 ORTHO05D008740 4.3e-79 299.3 460 40.7
Thhalv10004570m.g Eutrema salsugineum HOM05D006821 ORTHO05D008740 4.3e-79 299.3 384 45.8
DCAR_029732 Daucus carota HOM05D006821 ORTHO05D008740 7.3e-79 298.5 386 46.1
Dinv04728 Davidia involucrata HOM05D006821 ORTHO05D008740 6.2e-78 295.4 263 60.8
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 8.1e-78 295.0 381 47.0
Migut.N01911 Erythranthe guttata HOM05D006821 ORTHO05D008740 3.1e-77 293.1 382 46.1
SalBow4G1195 Salvia bowleyana HOM05D006821 ORTHO05D008740 5.8e-76 288.9 383 46.2
SalBow4G2420 Salvia bowleyana HOM05D006821 ORTHO05D008740 5.8e-76 288.9 383 46.2
Carub.0006s2610 Capsella rubella HOM05D006821 ORTHO05D008740 8.4e-75 285.0 389 44.2
Aa31LG11G8550 Aethionema arabicum HOM05D006821 ORTHO05D008740 1.1e-74 284.6 381 42.5
Sp2g20040 Schrenkiella parvula HOM05D006821 ORTHO05D008740 1.4e-74 284.3 382 44.0
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 2.4e-74 283.5 352 47.2
BcaB04g19632 Brassica carinata HOM05D006821 ORTHO05D008740 5.4e-74 282.3 387 42.6
BraA09t36137Z Brassica rapa HOM05D006821 ORTHO05D008740 2.7e-73 280.0 386 42.7
AL6G40810 Arabidopsis lyrata HOM05D006821 ORTHO05D008740 7.8e-73 278.5 388 44.3
TPR.G6944 Trifolium pratense HOM05D006821 ORTHO05D008740 7.8e-73 278.5 305 52.1
CARHR185340 Cardamine hirsuta HOM05D006821 ORTHO05D008740 1.0e-72 278.1 386 43.5
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 1.0e-72 278.1 385 45.2
A09p04980 Brassica napus HOM05D006821 ORTHO05D008740 3.0e-72 276.6 386 42.7
MELO3C004376.2 Cucumis melo HOM05D006821 ORTHO05D008740 2.5e-71 273.5 385 44.4
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 5.6e-71 272.3 380 43.7
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 5.6e-71 272.3 386 42.5
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 5.6e-71 272.3 386 42.5
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 1.3e-70 271.2 386 42.5
HPP92_024348 Vanilla planifolia HOM05D006821 ORTHO05D008740 2.1e-70 270.4 382 43.5
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 1.4e-69 267.7 382 43.5
CDE04G3363 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 6.4e-67 258.8 382 42.9
PSO210G3711 Papaver somniferum HOM05D006821 ORTHO05D008740 4.9e-59 232.6 280 47.9
Nn1g02511 Nelumbo nucifera HOM05D006821 ORTHO05D008740 3.2e-58 229.9 283 49.5
Pp3c20_9750 Physcomitrium patens HOM05D006821 ORTHO05D008740 1.0e-48 198.4 388 36.1
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 3.4e-44 183.3 340 33.5
Ah.07g201960 Amaranthus hybridus HOM05D006821 ORTHO05D008740 2.2e-35 154.1 379 29.3
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 2.7e-33 147.1 384 29.7
SMO259G0008 Selaginella moellendorffii HOM05D006821 ORTHO05D008740 1.3e-27 128.3 277 30.0
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 1.4e-26 124.8 300 29.3
AagrBONN_evm.TU.Sc2ySwM_228.4145 Anthoceros agrestis HOM05D006821 ORTHO05D008740 1.7e-19 101.3 180 37.2
CARHR032970 Cardamine hirsuta HOM05D006821 ORTHO05D008740 9.7e-15 85.5 92 47.8
TAR365G0108 Trochodendron aralioides HOM05D006821 ORTHO05D008740 9.1e-13 79.0 132 42.4
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 5.0e-11 73.2 357 24.9
CAN.G588.16 Capsicum annuum HOM05D004759 ORTHO05D005722 8.5e-11 72.4 337 25.2
Cc02_g16670 Coffea canephora HOM05D004759 ORTHO05D005722 8.5e-11 72.4 352 24.1
Solyc01g111040.4 Solanum lycopersicum HOM05D004759 ORTHO05D005722 1.5e-10 71.6 337 24.9
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 1.5e-10 71.6 337 24.6
Glyma.11G097500 Glycine max HOM05D004759 ORTHO05D005722 2.5e-10 70.9 310 24.5
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 3.2e-10 70.5 368 25.3
Sopen01g053100 Solanum pennellii HOM05D004759 ORTHO05D005722 3.2e-10 70.5 337 24.6
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 3.2e-10 70.5 362 25.1
Nitab4.5_0000283g0200 Nicotiana tabacum HOM05D004759 ORTHO05D005722 4.2e-10 70.1 336 22.6
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 4.2e-10 70.1 356 25.6
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 9.4e-10 68.9 353 24.6
Os10g0177200 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 1.2e-09 68.6 365 24.9
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 2.1e-09 67.8 342 23.1
Oeu002958.2 Olea europaea HOM05D004759 ORTHO05D005722 2.1e-09 67.8 164 29.3
MELO3C028972.2 Cucumis melo HOM05D006821 ORTHO05D034973 2.7e-09 67.4 67 52.2
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 1.0e-08 65.5 339 21.8
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 1.4e-08 65.1 352 23.6
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 1.8e-08 64.7 352 24.4
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 1.8e-08 64.7 335 23.0
SalBow6G6339 Salvia bowleyana HOM05D004759 ORTHO05D005722 1.8e-08 64.7 305 24.9
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 2.3e-08 64.3 293 25.3
Potri.009G127800 Populus trichocarpa HOM05D004759 ORTHO05D005722 2.3e-08 64.3 340 24.1
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 3.0e-08 63.9 337 22.8
Gorai.005G251800 Gossypium raimondii HOM05D004759 ORTHO05D005722 3.0e-08 63.9 352 23.6
Peaxi162Scf00362g01041 Petunia axillaris HOM05D004759 ORTHO05D005722 3.0e-08 63.9 337 21.4
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 4.0e-08 63.5 354 24.3
TPR.G24580 Trifolium pratense HOM05D006821 ORTHO05D008740 5.2e-08 63.2 105 39.0
QL11p047309 Quercus lobata HOM05D004759 ORTHO05D005722 6.8e-08 62.8 342 24.6
Gohir.D02G224000 Gossypium hirsutum HOM05D004759 ORTHO05D005722 8.8e-08 62.4 352 23.6
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 1.2e-07 62.0 351 22.8
TPR.G17153 Trifolium pratense HOM05D004759 ORTHO05D005722 2.0e-07 61.2 362 24.6
CiPaw.05G076100 Carya illinoinensis HOM05D004759 ORTHO05D005722 2.6e-07 60.8 362 24.9
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 3.4e-07 60.5 335 22.7
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 5.7e-07 59.7 348 22.4
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 5.7e-07 59.7 312 24.4
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 5.7e-07 59.7 344 23.3
Sabra04G0112000 Salix brachista HOM05D004759 ORTHO05D005722 7.5e-07 59.3 342 23.7
MSTRG.5434 Avicennia marina HOM05D004759 ORTHO05D005722 9.8e-07 58.9 389 24.2
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 9.8e-07 58.9 155 29.0
arahy.Tifrunner.gnm1.ann1.8G8R7R Arachis hypogaea HOM05D004759 ORTHO05D005722 1.3e-06 58.5 340 24.1
MSTRG.27666 Avicennia marina HOM05D004759 ORTHO05D005722 1.3e-06 58.5 159 27.7
Aqoxy5G01775 Aquilegia oxysepala HOM05D004759 ORTHO05D005722 2.2e-06 57.8 155 27.7
arahy.Tifrunner.gnm1.ann1.B05S7J Arachis hypogaea HOM05D004759 ORTHO05D005722 2.2e-06 57.8 342 24.3
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 2.2e-06 57.8 342 24.3
Hund00052 Selenicereus undatus HOM05D004759 ORTHO05D005722 2.2e-06 57.8 332 24.7
TWI79G0483 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 2.2e-06 57.8 338 24.6
Lalb_Chr19g0139561 Lupinus albus HOM05D004759 ORTHO05D005722 2.8e-06 57.4 333 23.4
Actinidia00585 Actinidia chinensis HOM05D004759 ORTHO05D005722 3.7e-06 57.0 164 26.2
Actinidia20479 Actinidia chinensis HOM05D004759 ORTHO05D005722 3.7e-06 57.0 297 23.6
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 3.7e-06 57.0 340 21.8
FAN24G2027 Fragaria x ananassa HOM05D004759 ORTHO05D005722 3.7e-06 57.0 332 22.9
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 3.7e-06 57.0 341 22.0
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 4.8e-06 56.6 341 23.2
Sed0012827 Sechium edule HOM05D000600 ORTHO05D000432 6.3e-06 56.2 155 30.3
Gohir.A12G040100 Gossypium hirsutum HOM05D004759 ORTHO05D005722 8.3e-06 55.8 292 24.3
PSO700G0005 Papaver somniferum HOM05D004759 ORTHO05D005722 8.3e-06 55.8 341 21.4
THA.LOC104824783 Tarenaya hassleriana HOM05D004759 ORTHO05D005722 8.3e-06 55.8 151 27.2


User provided reference genes

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