Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 2.8e-32 141.4 71 100.0
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 3.3e-25 117.9 62 93.5
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 1.0e-18 96.3 62 72.6
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 1.0e-18 96.3 62 72.6
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.0e-18 96.3 62 72.6
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.0e-18 96.3 62 72.6
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.0e-18 96.3 62 72.6
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 3.0e-18 94.7 62 71.0
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 3.9e-18 94.4 66 71.2
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 5.1e-18 94.0 62 72.6
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 5.1e-18 94.0 58 81.0
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 6.6e-18 93.6 66 66.7
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 8.6e-18 93.2 62 71.0
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.1e-17 92.8 62 67.7
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.1e-17 92.8 62 67.7
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.1e-17 92.8 62 69.4
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.5e-17 92.4 62 69.4
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.5e-17 92.4 66 68.2
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 1.5e-17 92.4 64 68.8
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 1.9e-17 92.0 58 79.3
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 2.5e-17 91.7 62 64.5
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 2.5e-17 91.7 58 79.3
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 2.5e-17 91.7 62 66.1
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 3.3e-17 91.3 62 69.4
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 4.3e-17 90.9 62 67.7
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 4.3e-17 90.9 59 72.9
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 5.6e-17 90.5 63 63.5
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 5.6e-17 90.5 62 67.7
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 5.6e-17 90.5 62 67.7
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 5.6e-17 90.5 62 66.1
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 5.6e-17 90.5 62 66.1
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 5.6e-17 90.5 62 66.1
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 5.6e-17 90.5 64 62.5
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 5.6e-17 90.5 62 66.1
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 5.6e-17 90.5 62 66.1
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 5.6e-17 90.5 62 66.1
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 7.3e-17 90.1 62 67.7
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 7.3e-17 90.1 59 71.2
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 7.3e-17 90.1 62 64.5
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 7.3e-17 90.1 62 67.7
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 7.3e-17 90.1 62 69.4
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 9.5e-17 89.7 59 72.9
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 9.5e-17 89.7 62 62.9
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 9.5e-17 89.7 59 72.9
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 1.2e-16 89.4 61 67.2
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.2e-16 89.4 59 72.9
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 1.2e-16 89.4 59 72.9
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 1.2e-16 89.4 61 70.5
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.6e-16 89.0 62 64.5
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 1.6e-16 89.0 69 65.2
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 1.6e-16 89.0 62 71.0
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 2.8e-16 88.2 62 62.9
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 2.8e-16 88.2 69 63.8
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 2.8e-16 88.2 69 63.8
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 2.8e-16 88.2 69 63.8
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 3.6e-16 87.8 58 69.0
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 4.7e-16 87.4 59 67.8
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 6.2e-16 87.0 59 67.8
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 8.1e-16 86.7 63 66.7
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 8.1e-16 86.7 62 58.1
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 1.4e-15 85.9 62 61.3
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.8e-15 85.5 58 63.8
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 1.8e-15 85.5 61 65.6
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 1.8e-15 85.5 59 66.1
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 1.8e-15 85.5 61 65.6
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 2.3e-15 85.1 59 61.0
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 2.3e-15 85.1 62 61.3
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 2.3e-15 85.1 59 67.8
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 2.3e-15 85.1 59 67.8
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 2.3e-15 85.1 66 56.1
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 3.1e-15 84.7 58 63.8
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 3.1e-15 84.7 58 65.5
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 3.1e-15 84.7 62 61.3
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 6.8e-15 83.6 62 58.1
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.2e-14 82.8 61 62.3
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 1.2e-14 82.8 59 71.2
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 2.0e-14 82.0 62 69.4
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 2.0e-14 82.0 69 59.4
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 2.0e-14 82.0 59 64.4
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.6e-14 81.6 59 66.1
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 3.4e-14 81.3 64 59.4
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 4.4e-14 80.9 61 60.7
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 5.8e-14 80.5 62 54.8
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 5.8e-14 80.5 62 58.1
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 1.7e-13 79.0 61 65.6
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 1.7e-13 79.0 66 53.0
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 2.2e-13 78.6 59 54.2
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 2.2e-13 78.6 59 54.2
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 2.2e-13 78.6 61 62.3
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 2.2e-13 78.6 62 61.3
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 2.9e-13 78.2 62 61.3
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 2.9e-13 78.2 62 61.3
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 2.9e-13 78.2 62 61.3
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 2.9e-13 78.2 62 61.3
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 2.9e-13 78.2 64 53.1
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 4.9e-13 77.4 61 65.6
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 6.4e-13 77.0 68 55.9
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 6.4e-13 77.0 68 55.9
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 2.4e-12 75.1 62 58.1
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 3.2e-12 74.7 62 58.1
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 4.1e-12 74.3 62 56.5
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 4.1e-12 74.3 58 63.8
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 7.1e-12 73.6 66 54.5
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 7.1e-12 73.6 62 56.5
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 7.1e-12 73.6 62 56.5
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 9.2e-12 73.2 62 54.8
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 1.6e-11 72.4 62 56.5
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 2.1e-11 72.0 68 45.6
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 1.7e-10 68.9 58 58.6
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 1.1e-09 66.2 61 55.7
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 9.5e-09 63.2 62 56.5
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 1.6e-08 62.4 61 54.1
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 3.1e-07 58.2 53 50.9
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 4.0e-07 57.8 62 54.8
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 6.8e-07 57.0 63 42.9


User provided reference genes

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