Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p025001 Quercus lobata HOM05D005403 ORTHO05D006572 5.4e-40 167.2 82 100.0
TAR365G0414 Trochodendron aralioides HOM05D005403 ORTHO05D006572 3.6e-36 154.5 80 91.2
Manes.08G133000 Manihot esculenta HOM05D005403 ORTHO05D006572 1.8e-35 152.1 80 90.0
Manes.09G153900 Manihot esculenta HOM05D005403 ORTHO05D006572 1.8e-35 152.1 80 90.0
CiPaw.08G124800 Carya illinoinensis HOM05D005403 ORTHO05D006572 2.4e-35 151.8 80 90.0
vmacro05240 Vaccinium macrocarpon HOM05D005403 ORTHO05D006572 2.4e-35 151.8 80 87.5
GSVIVG01021827001 Vitis vinifera HOM05D005403 ORTHO05D006572 4.0e-35 151.0 80 90.0
Eucgr.B02113 Eucalyptus grandis HOM05D005403 ORTHO05D006572 5.3e-35 150.6 80 90.0
Gohir.A13G170400 Gossypium hirsutum HOM05D005403 ORTHO05D006572 9.0e-35 149.8 80 90.0
Hund06962 Selenicereus undatus HOM05D005403 ORTHO05D006572 9.0e-35 149.8 82 87.8
Actinidia05774 Actinidia chinensis HOM05D005403 ORTHO05D006572 1.2e-34 149.4 80 86.2
Gohir.D13G175800 Gossypium hirsutum HOM05D005403 ORTHO05D006572 1.2e-34 149.4 80 90.0
Duzib177G0905 Durio zibethinus HOM05D005403 ORTHO05D006572 1.5e-34 149.1 80 90.0
Gorai.013G201200 Gossypium raimondii HOM05D005403 ORTHO05D006572 1.5e-34 149.1 80 90.0
Actinidia30938 Actinidia chinensis HOM05D005403 ORTHO05D006572 2.6e-34 148.3 80 85.0
Ciclev10002653m.g Citrus clementina HOM05D005403 ORTHO05D006572 2.6e-34 148.3 80 87.5
Thecc.05G286500 Theobroma cacao HOM05D005403 ORTHO05D006572 2.6e-34 148.3 80 90.0
TPR.G32522 Trifolium pratense HOM05D005403 ORTHO05D006572 2.6e-34 148.3 80 88.8
Medtr1g080960 Medicago truncatula HOM05D005403 ORTHO05D006572 3.4e-34 147.9 80 88.8
Sc09g0003870 Simmondsia chinensis HOM05D005403 ORTHO05D006572 3.4e-34 147.9 80 86.2
Psat6g146440 Pisum sativum HOM05D005403 ORTHO05D006572 4.4e-34 147.5 80 88.8
PGR083G0704 Punica granatum HOM05D005403 ORTHO05D006572 5.8e-34 147.1 80 87.5
Rhsim10G0108600 Rhododendron simsii HOM05D005403 ORTHO05D006572 5.8e-34 147.1 80 85.0
arahy.Tifrunner.gnm1.ann1.XU8J57 Arachis hypogaea HOM05D005403 ORTHO05D006572 7.6e-34 146.7 80 86.2
Potri.013G039500 Populus trichocarpa HOM05D005403 ORTHO05D006572 7.6e-34 146.7 80 87.5
SGA_v2.0_scaffold80G25907 Striga asiatica HOM05D005403 ORTHO05D006572 7.6e-34 146.7 80 88.8
Ca_10048_v3 Cicer arietinum L. HOM05D005403 ORTHO05D006572 9.9e-34 146.4 80 87.5
Lalb_Chr06g0168031 Lupinus albus HOM05D005403 ORTHO05D006572 9.9e-34 146.4 80 86.2
TAR362G0997 Trochodendron aralioides HOM05D005403 ORTHO05D006572 9.9e-34 146.4 80 87.5
AUR62001024 Chenopodium quinoa HOM05D005403 ORTHO05D006572 1.3e-33 146.0 82 87.8
Cc02_g31920 Coffea canephora HOM05D005403 ORTHO05D006572 1.3e-33 146.0 80 86.2
Duzib106G1152 Durio zibethinus HOM05D005403 ORTHO05D006572 1.3e-33 146.0 80 86.2
TWI77G0725 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 1.3e-33 146.0 80 86.2
Lj5g0020047 Lotus japonicus HOM05D005403 ORTHO05D006572 1.7e-33 145.6 80 86.2
TWI74G0584 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 1.7e-33 145.6 81 87.7
MBI11_g35357_MAGBIO Magnolia biondii HOM05D005403 ORTHO05D006572 2.2e-33 145.2 80 85.0
CDE07G0028 Ceratophyllum demersum HOM05D005403 ORTHO05D006572 2.9e-33 144.8 80 87.5
Hma1.2p1_0332F.1_g127630 Hydrangea macrophylla HOM05D005403 ORTHO05D006572 2.9e-33 144.8 80 87.5
Peaxi162Scf00282g00219 Petunia axillaris HOM05D005403 ORTHO05D006572 2.9e-33 144.8 80 86.2
Lalb_Chr02g0148771 Lupinus albus HOM05D005403 ORTHO05D006572 3.8e-33 144.4 80 86.2
AL3G14940 Arabidopsis lyrata HOM05D005403 ORTHO05D006572 4.9e-33 144.1 80 86.2
A05p42780 Brassica napus HOM05D005403 ORTHO05D006572 4.9e-33 144.1 80 86.2
BraA05t22974Z Brassica rapa HOM05D005403 ORTHO05D006572 4.9e-33 144.1 80 86.2
Carub.0003s0395 Capsella rubella HOM05D005403 ORTHO05D006572 4.9e-33 144.1 80 86.2
Sp3g03620 Schrenkiella parvula HOM05D005403 ORTHO05D006572 4.9e-33 144.1 80 86.2
SGA_v2.0_scaffold81G26087 Striga asiatica HOM05D005403 ORTHO05D006572 4.9e-33 144.1 80 83.8
C05p62500 Brassica napus HOM05D005403 ORTHO05D006572 6.4e-33 143.7 80 86.2
Thhalv10021632m.g Eutrema salsugineum HOM05D005403 ORTHO05D006572 6.4e-33 143.7 80 86.2
Glyma.10G161600 Glycine max HOM05D005403 ORTHO05D006572 6.4e-33 143.7 80 87.5
SalBow8G2599 Salvia bowleyana HOM05D005403 ORTHO05D006572 6.4e-33 143.7 80 83.8
VMungo0720G0096 Vigna mungo HOM05D005403 ORTHO05D006572 6.4e-33 143.7 80 87.5
HanXRQChr15g0493451 Helianthus annuus HOM05D005403 ORTHO05D006572 8.4e-33 143.3 80 85.0
Ah.06g192240 Amaranthus hybridus HOM05D005403 ORTHO05D006572 1.1e-32 142.9 82 85.4
BolC1t05726H Brassica oleracea HOM05D005403 ORTHO05D006572 1.1e-32 142.9 80 85.0
BraA01t04505Z Brassica rapa HOM05D005403 ORTHO05D006572 1.1e-32 142.9 80 85.0
Sed0002619 Sechium edule HOM05D005403 ORTHO05D006572 1.1e-32 142.9 80 82.5
ClCG02G016540 Citrullus lanatus HOM05D005403 ORTHO05D006572 1.4e-32 142.5 80 82.5
Phvul.007G187000 Phaseolus vulgaris HOM05D005403 ORTHO05D006572 1.4e-32 142.5 80 86.2
BcaB04g21347 Brassica carinata HOM05D005403 ORTHO05D006572 1.9e-32 142.1 80 85.0
BcaNung06422 Brassica carinata HOM05D005403 ORTHO05D006572 1.9e-32 142.1 80 85.0
CANSAT54G1830 Cannabis sativa HOM05D005403 ORTHO05D006572 2.4e-32 141.7 79 84.8
MD12G1238700 Malus domestica HOM05D005403 ORTHO05D006572 2.4e-32 141.7 79 84.8
Nitab4.5_0005582g0040 Nicotiana tabacum HOM05D005403 ORTHO05D006572 2.4e-32 141.7 80 82.5
BNapus_Darmor_BZH_scaffold_78p01010 Brassica napus HOM05D005403 ORTHO05D006572 3.2e-32 141.4 80 85.0
Nitab4.5_0004469g0080 Nicotiana tabacum HOM05D005403 ORTHO05D006572 3.2e-32 141.4 80 81.2
RcHm_v2.0_Chr3g0451391 Rosa chinensis HOM05D005403 ORTHO05D006572 3.2e-32 141.4 79 87.3
THA.LOC104818636 Tarenaya hassleriana HOM05D005403 ORTHO05D006572 3.2e-32 141.4 80 83.8
AT3G04780 Arabidopsis thaliana HOM05D005403 ORTHO05D006572 4.2e-32 141.0 80 85.0
CARHR079030 Cardamine hirsuta HOM05D005403 ORTHO05D006572 4.2e-32 141.0 80 83.8
CsaV3_2G004230 Cucumis sativus L. HOM05D005403 ORTHO05D006572 4.2e-32 141.0 80 81.2
CAN.G134.109 Capsicum annuum HOM05D005403 ORTHO05D006572 7.1e-32 140.2 80 82.5
Oeu027466.2 Olea europaea HOM05D005403 ORTHO05D006572 7.1e-32 140.2 91 79.1
Prupe.6G341600 Prunus persica HOM05D005403 ORTHO05D006572 7.1e-32 140.2 79 86.1
FAN02G1200 Fragaria x ananassa HOM05D005403 ORTHO05D006572 9.3e-32 139.8 79 86.1
MD04G1222600 Malus domestica HOM05D005403 ORTHO05D006572 9.3e-32 139.8 79 84.8
PSO210G2729 Papaver somniferum HOM05D005403 ORTHO05D006572 9.3e-32 139.8 80 81.2
PSO832G0823 Papaver somniferum HOM05D005403 ORTHO05D006572 9.3e-32 139.8 80 81.2
Solyc01g097450.3 Solanum lycopersicum HOM05D005403 ORTHO05D006572 9.3e-32 139.8 80 83.8
Sopen01g041120 Solanum pennellii HOM05D005403 ORTHO05D006572 9.3e-32 139.8 80 83.8
PGSC0003DMG400019449 Solanum tuberosum HOM05D005403 ORTHO05D006572 9.3e-32 139.8 80 83.8
unitig_21.g20052 Utricularia gibba HOM05D005403 ORTHO05D006572 9.3e-32 139.8 80 83.8
FAN09G2181 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.2e-31 139.4 79 84.8
FvH4_6g03140 Fragaria vesca HOM05D005403 ORTHO05D006572 1.6e-31 139.0 79 84.8
FAN05G1135 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.6e-31 139.0 79 84.8
FAN05G5291 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.6e-31 139.0 79 84.8
FAN14G0649 Fragaria x ananassa HOM05D005403 ORTHO05D006572 1.6e-31 139.0 79 84.8
Aa31LG5G15180 Aethionema arabicum HOM05D005403 ORTHO05D006572 2.1e-31 138.7 80 82.5
ECA232G3347 Erigeron canadensis HOM05D005403 ORTHO05D006572 2.1e-31 138.7 80 83.8
MELO3C004371.2 Cucumis melo HOM05D005403 ORTHO05D006572 2.7e-31 138.3 88 76.1
Sed0000415 Sechium edule HOM05D005403 ORTHO05D006572 6.0e-31 137.1 80 78.8
Nn1g02427 Nelumbo nucifera HOM05D005403 ORTHO05D006572 1.7e-30 135.6 80 80.0
Aqoxy2G03453 Aquilegia oxysepala HOM05D005403 ORTHO05D006572 2.3e-30 135.2 79 81.0
Nn6g34152 Nelumbo nucifera HOM05D005403 ORTHO05D006572 2.5e-29 131.7 80 77.5
Migut.N01905 Erythranthe guttata HOM05D005403 ORTHO05D006572 3.6e-28 127.9 84 75.0
Cfa006448 Carpinus fangiana HOM05D005403 ORTHO05D006572 2.4e-27 125.2 65 90.8
Haze_04345 Corylus avellana HOM05D005403 ORTHO05D006572 3.1e-27 124.8 65 89.2
SMO340G0197 Selaginella moellendorffii HOM05D005403 ORTHO05D006572 3.1e-27 124.8 79 70.9
Zm00001eb060640 Zea mays HOM05D005403 ORTHO05D006572 1.5e-26 122.5 81 74.1
Zm00001eb213000 Zea mays HOM05D005403 ORTHO05D006572 1.5e-26 122.5 81 70.4
Sabra13G0036900 Salix brachista HOM05D005403 ORTHO05D006572 2.6e-26 121.7 65 87.7
Gohir.D11G263600 Gossypium hirsutum HOM05D005403 ORTHO05D006572 3.4e-26 121.3 80 78.8
Os03g0795500 Oryza sativa ssp. japonica HOM05D005403 ORTHO05D006572 3.4e-26 121.3 81 71.6
Gohir.A11G253700 Gossypium hirsutum HOM05D005403 ORTHO05D006572 5.8e-26 120.6 80 76.2
Pp3c5_6010 Physcomitrium patens HOM05D005403 ORTHO05D006572 5.8e-26 120.6 81 65.4
COL.COLO4_15309 Corchorus olitorius HOM05D005403 ORTHO05D006572 7.6e-26 120.2 65 87.7
Mapoly0034s0051 Marchantia polymorpha HOM05D005403 ORTHO05D006572 9.9e-26 119.8 77 71.4
AUR62004927 Chenopodium quinoa HOM05D005403 ORTHO05D006572 1.7e-25 119.0 65 86.2
Gorai.007G283600 Gossypium raimondii HOM05D005403 ORTHO05D006572 3.8e-25 117.9 80 76.2
HPP92_015625 Vanilla planifolia HOM05D005403 ORTHO05D006572 4.9e-25 117.5 80 68.8
Sabra05G0045800 Salix brachista HOM05D005403 ORTHO05D006572 1.9e-24 115.5 65 83.1
Lj7A489G21 Lonicera japonica HOM05D005403 ORTHO05D006572 5.4e-24 114.0 65 83.1
SEGI_41475 Sequoiadendron giganteum HOM05D005403 ORTHO05D006572 9.3e-24 113.2 72 73.6
ATR0665G176 Amborella trichopoda HOM05D005403 ORTHO05D006572 1.6e-23 112.5 76 72.4
AagrBONN_evm.TU.Sc2ySwM_344.2056 Anthoceros agrestis HOM05D005403 ORTHO05D006572 3.5e-23 111.3 80 66.2
EL10Ac4g09116 Beta vulgaris HOM05D005403 ORTHO05D006572 3.5e-23 111.3 70 80.0
DCAR_011698 Daucus carota HOM05D005403 ORTHO05D006572 3.0e-22 108.2 74 73.0
DCAR_027617 Daucus carota HOM05D005403 ORTHO05D006572 9.6e-21 103.2 65 75.4
Atru.chr2.798 Acer truncatum HOM05D005403 ORTHO05D006572 3.4e-18 94.7 50 88.0
CBR_g8269 Chara braunii HOM05D005403 ORTHO05D006572 1.3e-17 92.8 70 64.3
Potri.005G052100 Populus trichocarpa HOM05D005403 ORTHO05D006572 1.4e-16 89.4 80 60.0
Sopen04g005140 Solanum pennellii HOM05D005403 ORTHO05D006572 4.8e-12 74.3 62 56.5
Lsat_1_v5_gn_4_137100 Lactuca sativa HOM05D005403 ORTHO05D006572 8.2e-12 73.6 52 63.5
Solyc04g010010.3 Solanum lycopersicum HOM05D005403 ORTHO05D006572 8.2e-12 73.6 62 56.5
Cre17.g730250 Chlamydomonas reinhardtii HOM05D005403 ORTHO05D006572 1.1e-11 73.2 80 48.8
Pp3c6_27050 Physcomitrium patens HOM05D005403 ORTHO05D006572 1.2e-10 69.7 47 61.7
Solyc04g010030.1 Solanum lycopersicum HOM05D005403 ORTHO05D006572 5.8e-10 67.4 54 53.7
Sopen04g005160 Solanum pennellii HOM05D005403 ORTHO05D006572 7.6e-10 67.0 54 53.7
Haze_27143 Corylus avellana HOM05D005403 ORTHO05D006572 6.5e-09 63.9 57 50.9
PRCOL_00004155 Prasinoderma coloniale HOM05D005403 ORTHO05D006572 8.4e-09 63.5 79 41.8
MCO08G264 Micromonas commoda HOM05D005403 ORTHO05D006572 6.1e-07 57.4 76 36.8


User provided reference genes

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