Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 3.0e-62 241.5 109 100.0
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 3.7e-12 75.1 36 97.2
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 5.4e-11 71.2 36 88.9
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 7.0e-11 70.9 36 88.9
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.6e-10 69.7 36 86.1
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 2.0e-10 69.3 36 86.1
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 2.7e-10 68.9 36 86.1
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 2.7e-10 68.9 38 81.6
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 3.5e-10 68.6 38 81.6
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 3.5e-10 68.6 36 86.1
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.6e-10 68.2 36 86.1
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 4.6e-10 68.2 36 83.3
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 6.0e-10 67.8 36 83.3
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 6.0e-10 67.8 36 83.3
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 6.0e-10 67.8 36 83.3
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 7.8e-10 67.4 36 83.3
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 7.8e-10 67.4 36 83.3
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 7.8e-10 67.4 36 83.3
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 7.8e-10 67.4 36 83.3
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 1.0e-09 67.0 36 83.3
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 1.0e-09 67.0 36 83.3
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.0e-09 67.0 36 83.3
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.0e-09 67.0 36 80.6
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 1.7e-09 66.2 36 80.6
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 1.7e-09 66.2 36 80.6
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 2.3e-09 65.9 36 80.6
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 2.3e-09 65.9 36 83.3
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 2.3e-09 65.9 36 83.3
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 2.3e-09 65.9 36 77.8
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 2.3e-09 65.9 36 83.3
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 2.3e-09 65.9 36 83.3
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 2.3e-09 65.9 36 83.3
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 2.3e-09 65.9 36 80.6
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.3e-09 65.9 36 83.3
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 2.3e-09 65.9 36 83.3
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 2.3e-09 65.9 36 80.6
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 3.0e-09 65.5 36 77.8
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 3.0e-09 65.5 36 77.8
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 3.0e-09 65.5 36 80.6
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 3.0e-09 65.5 36 80.6
QL12p039879 Quercus lobata HOM05D000003 ORTHO05D000004 3.0e-09 65.5 51 54.9
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 3.0e-09 65.5 36 80.6
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 3.9e-09 65.1 36 80.6
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 3.9e-09 65.1 36 80.6
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 5.0e-09 64.7 36 77.8
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 6.6e-09 64.3 36 80.6
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 6.6e-09 64.3 36 80.6
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 6.6e-09 64.3 36 80.6
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 6.6e-09 64.3 36 77.8
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 8.6e-09 63.9 35 80.0
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 8.6e-09 63.9 39 66.7
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.9e-08 62.8 39 66.7
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 2.5e-08 62.4 36 75.0
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.5e-08 62.4 36 75.0
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 2.5e-08 62.4 36 75.0
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 2.5e-08 62.4 36 75.0
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 2.5e-08 62.4 36 75.0
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 3.3e-08 62.0 36 75.0
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 3.3e-08 62.0 36 75.0
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 3.3e-08 62.0 36 75.0
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.3e-08 62.0 36 75.0
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.3e-08 62.0 36 75.0
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.3e-08 62.0 36 75.0
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 3.3e-08 62.0 36 75.0
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 3.3e-08 62.0 36 75.0
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 3.3e-08 62.0 36 72.2
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 3.3e-08 62.0 36 77.8
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 4.3e-08 61.6 36 75.0
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.6e-08 61.2 36 72.2
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 5.6e-08 61.2 38 71.1
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 5.6e-08 61.2 36 75.0
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 9.5e-08 60.5 36 72.2
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 9.5e-08 60.5 36 72.2
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 9.5e-08 60.5 36 75.0
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 9.5e-08 60.5 36 69.4
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 9.5e-08 60.5 36 69.4
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 9.5e-08 60.5 36 72.2
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 9.5e-08 60.5 36 69.4
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 9.5e-08 60.5 36 72.2
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 9.5e-08 60.5 36 72.2
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.2e-07 60.1 41 63.4
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.2e-07 60.1 36 69.4
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.2e-07 60.1 36 69.4
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.6e-07 59.7 39 61.5
QL11p033063 Quercus lobata HOM05D004852 ORTHO05D006128 1.6e-07 59.7 54 44.4
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 2.1e-07 59.3 36 69.4
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 2.8e-07 58.9 34 76.5
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.8e-07 58.9 34 73.5
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 3.6e-07 58.5 36 75.0
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 3.6e-07 58.5 38 68.4
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 4.7e-07 58.2 30 90.0
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 4.7e-07 58.2 36 69.4
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 6.2e-07 57.8 36 69.4
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 6.2e-07 57.8 36 72.2
QL03p039930 Quercus lobata HOM05D000003 ORTHO05D000004 6.2e-07 57.8 51 49.0
QL07p010213 Quercus lobata HOM05D002614 ORTHO05D000004 8.0e-07 57.4 51 49.0
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.1e-06 57.0 34 70.6
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 1.1e-06 57.0 36 66.7
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.1e-06 57.0 36 69.4
QL10p019376 Quercus lobata HOM05D000003 ORTHO05D000004 1.1e-06 57.0 51 49.0
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.1e-06 57.0 36 72.2
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.1e-06 57.0 37 70.3
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 1.4e-06 56.6 54 53.7
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.4e-06 56.6 33 72.7
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 1.4e-06 56.6 36 63.9
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.8e-06 56.2 34 70.6
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 2.3e-06 55.8 36 63.9
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 2.3e-06 55.8 35 68.6
QL07p016383 Quercus lobata HOM05D000003 ORTHO05D000004 2.3e-06 55.8 51 45.1
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 3.1e-06 55.5 36 69.4
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 4.0e-06 55.1 36 58.3
QL10p023951 Quercus lobata HOM05D003769 ORTHO05D004521 5.2e-06 54.7 51 45.1
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 6.8e-06 54.3 36 61.1
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 8.9e-06 53.9 34 70.6
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 8.9e-06 53.9 51 47.1


User provided reference genes

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