Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 2.4e-53 211.8 102 100.0
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 1.3e-43 179.5 93 92.5
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 2.0e-39 165.6 93 82.8
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 3.3e-39 164.9 93 82.8
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 5.7e-39 164.1 93 83.9
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 1.3e-38 162.9 93 81.7
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.7e-38 162.5 93 80.6
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 2.2e-38 162.2 93 78.5
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 5.3e-37 157.5 93 77.4
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 5.3e-37 157.5 93 77.4
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 7.0e-37 157.1 95 77.9
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 7.0e-37 157.1 93 76.3
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 9.1e-37 156.8 93 77.4
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 9.1e-37 156.8 93 76.3
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 2.0e-36 155.6 92 77.2
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 2.0e-36 155.6 93 75.3
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 2.7e-36 155.2 93 76.3
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 2.7e-36 155.2 93 77.4
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 4.5e-36 154.5 93 76.3
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 4.5e-36 154.5 93 77.4
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 4.5e-36 154.5 93 76.3
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 5.9e-36 154.1 93 76.3
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 5.9e-36 154.1 93 76.3
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 7.7e-36 153.7 93 76.3
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 1.0e-35 153.3 93 76.3
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.0e-35 153.3 93 77.4
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 1.0e-35 153.3 93 76.3
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 1.0e-35 153.3 93 76.3
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 1.3e-35 152.9 93 75.3
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 1.3e-35 152.9 93 77.4
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 1.3e-35 152.9 94 74.5
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 1.3e-35 152.9 93 75.3
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 1.7e-35 152.5 93 74.2
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.7e-35 152.5 94 75.5
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.7e-35 152.5 93 75.3
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 2.2e-35 152.1 93 76.3
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 2.2e-35 152.1 93 75.3
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 2.9e-35 151.8 93 75.3
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.9e-35 151.8 93 76.3
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.9e-35 151.8 93 76.3
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 5.0e-35 151.0 93 71.0
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 8.5e-35 150.2 93 71.0
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 1.1e-34 149.8 93 76.3
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 2.5e-34 148.7 93 72.0
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 3.2e-34 148.3 93 73.1
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 3.2e-34 148.3 93 69.9
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 3.2e-34 148.3 93 71.0
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 5.5e-34 147.5 93 73.1
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 5.5e-34 147.5 93 69.9
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 7.2e-34 147.1 93 72.0
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 9.4e-34 146.7 93 73.1
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 9.4e-34 146.7 93 69.9
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 1.2e-33 146.4 93 68.8
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 2.1e-33 145.6 93 73.1
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 2.7e-33 145.2 93 69.9
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 2.7e-33 145.2 93 69.9
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 3.6e-33 144.8 93 69.9
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.6e-33 144.8 93 69.9
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.6e-33 144.8 93 69.9
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.6e-33 144.8 94 73.4
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 3.6e-33 144.8 93 72.0
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 6.1e-33 144.1 93 71.0
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 6.1e-33 144.1 93 72.0
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 1.0e-32 143.3 93 67.7
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 1.4e-32 142.9 93 71.0
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 1.4e-32 142.9 93 71.0
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 2.3e-32 142.1 93 71.0
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 2.3e-32 142.1 93 71.0
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 3.0e-32 141.7 93 69.9
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 4.0e-32 141.4 93 71.0
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 4.0e-32 141.4 93 71.0
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 4.0e-32 141.4 92 68.5
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 4.0e-32 141.4 87 75.9
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 4.0e-32 141.4 93 68.8
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 4.0e-32 141.4 93 69.9
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 5.2e-32 141.0 93 68.8
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 6.8e-32 140.6 93 69.9
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 8.8e-32 140.2 93 68.8
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 1.5e-31 139.4 93 68.8
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 1.5e-31 139.4 93 68.8
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 1.5e-31 139.4 93 67.7
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 2.6e-31 138.7 95 67.4
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 2.6e-31 138.7 93 66.7
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 5.7e-31 137.5 93 68.8
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 7.5e-31 137.1 93 67.7
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 2.2e-30 135.6 93 67.7
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 8.3e-30 133.7 93 64.5
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 8.3e-30 133.7 107 59.8
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 1.1e-29 133.3 95 70.5
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 1.4e-29 132.9 93 66.7
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 1.8e-29 132.5 93 66.7
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 7.0e-29 130.6 108 60.2
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 9.1e-29 130.2 94 60.6
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.6e-28 129.4 94 64.9
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 1.6e-28 129.4 93 63.4
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.5e-28 128.3 93 62.4
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 5.9e-28 127.5 109 57.8
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 9.5e-26 120.2 96 58.3
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 9.5e-26 120.2 96 58.3
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 3.6e-25 118.2 94 55.3
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.1e-25 117.5 76 71.1
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.4e-24 116.3 75 70.7
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 4.0e-24 114.8 93 55.9
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 5.2e-24 114.4 93 54.8
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.0e-19 100.1 73 67.1
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 3.8e-19 98.2 91 45.1
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 3.3e-18 95.1 87 49.4
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 3.6e-17 91.7 87 43.7
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 6.1e-17 90.9 87 48.3
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 3.4e-15 85.1 55 67.3
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 1.2e-12 76.6 85 45.9
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 2.7e-12 75.5 54 57.4
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 1.0e-11 73.6 44 70.5
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 5.0e-11 71.2 103 38.8
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 1.5e-10 69.7 58 50.0
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 3.3e-10 68.6 37 78.4
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.3e-08 62.4 84 39.3


User provided reference genes

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