Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 2.1e-191 672.2 333 100.0
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 7.8e-186 653.7 333 97.0
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 7.3e-160 567.4 336 84.2
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 3.6e-159 565.1 336 84.2
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 1.1e-152 543.5 342 80.1
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 1.3e-137 493.4 340 74.1
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 1.9e-136 489.6 336 72.6
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 1.9e-136 489.6 344 72.4
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 4.3e-136 488.4 340 73.5
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 7.4e-136 487.6 344 72.1
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 4.8e-135 485.0 346 70.8
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 1.8e-134 483.0 335 71.9
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 9.0e-134 480.7 315 78.4
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 1.2e-133 480.3 335 71.9
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 2.0e-133 479.6 338 71.6
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 3.4e-133 478.8 341 69.8
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 2.9e-132 475.7 338 70.4
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 6.0e-130 468.0 336 68.8
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 1.0e-129 467.2 348 68.7
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 1.3e-129 466.8 336 69.6
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 2.3e-129 466.1 329 69.3
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 1.5e-128 463.4 341 69.2
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 1.9e-128 463.0 346 69.7
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 2.5e-128 462.6 336 67.9
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 3.3e-128 462.2 312 74.7
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 3.3e-128 462.2 336 70.5
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 2.8e-127 459.1 345 67.2
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 4.8e-127 458.4 335 68.4
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 1.1e-126 457.2 351 67.0
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 1.4e-126 456.8 335 68.4
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 1.8e-126 456.4 336 67.6
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 9.0e-126 454.1 362 66.6
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 4.5e-125 451.8 344 67.4
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 1.0e-124 450.7 330 68.2
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 2.2e-124 449.5 333 67.3
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 2.9e-124 449.1 359 64.9
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 4.9e-124 448.4 344 66.6
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 1.1e-123 447.2 342 66.7
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 1.9e-123 446.4 334 66.2
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 3.2e-123 445.7 355 64.5
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 4.2e-123 445.3 338 66.6
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 1.2e-122 443.7 346 66.2
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 3.5e-122 442.2 340 65.6
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 3.5e-122 442.2 308 73.4
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 4.6e-122 441.8 336 64.3
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 4.6e-122 441.8 338 66.6
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 6.0e-122 441.4 350 65.1
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 6.0e-122 441.4 334 64.4
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 3.0e-121 439.1 314 69.4
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 3.9e-121 438.7 334 67.4
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 3.9e-121 438.7 340 65.9
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 6.7e-121 438.0 329 66.0
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 8.7e-121 437.6 337 65.9
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 1.1e-120 437.2 317 68.8
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 2.5e-120 436.0 340 65.3
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 4.3e-120 435.3 336 66.1
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 7.4e-120 434.5 336 63.4
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 1.3e-119 433.7 329 65.0
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 1.3e-119 433.7 341 63.6
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 8.2e-119 431.0 335 64.2
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 1.4e-118 430.3 315 67.9
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 3.1e-118 429.1 333 64.6
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 4.5e-117 425.2 321 65.1
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 4.5e-117 425.2 304 66.8
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 7.7e-117 424.5 296 68.6
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 1.0e-116 424.1 310 67.4
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 2.2e-116 422.9 330 63.0
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 9.4e-115 417.5 339 63.1
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 9.4e-115 417.5 302 67.2
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 1.2e-114 417.2 302 66.9
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 7.9e-114 414.5 293 68.3
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 1.0e-113 414.1 333 63.1
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 1.0e-113 414.1 344 63.4
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 2.3e-113 412.9 307 66.1
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 3.9e-113 412.1 350 60.6
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 5.1e-113 411.8 347 64.0
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 5.7e-112 408.3 330 63.0
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 7.4e-112 407.9 330 63.0
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.2e-109 400.6 302 64.6
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 3.4e-109 399.1 330 61.5
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 1.1e-107 394.0 331 61.6
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 1.1e-107 394.0 331 61.6
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 5.5e-107 391.7 324 60.8
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 1.6e-106 390.2 311 61.1
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 1.6e-106 390.2 337 61.7
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 2.7e-106 389.4 302 64.2
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 2.7e-106 389.4 340 60.9
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 2.3e-105 386.3 289 65.4
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 4.4e-104 382.1 328 60.4
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 4.8e-103 378.6 214 81.3
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 3.5e-101 372.5 267 65.9
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 6.5e-100 368.2 269 66.5
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 6.5e-100 368.2 254 70.9
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 1.4e-99 367.1 284 66.5
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 3.2e-99 365.9 306 57.8
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.2e-98 364.0 321 58.6
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 2.3e-97 359.8 231 70.1
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 1.2e-93 347.4 348 54.0
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 4.5e-93 345.5 248 71.0
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 3.7e-87 325.9 339 50.4
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 8.5e-84 314.7 343 51.6
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 3.2e-70 269.6 354 38.7
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 3.2e-70 269.6 284 46.8
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 1.6e-69 267.3 302 44.4
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 5.0e-68 262.3 285 45.6
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 2.1e-66 256.9 244 53.7
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 3.1e-65 253.1 217 61.8
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 9.2e-62 241.5 227 58.1
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 9.5e-59 231.5 189 61.9
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 2.1e-58 230.3 238 44.5
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 1.9e-54 217.2 313 40.9
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.4e-49 201.1 303 38.9
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 9.9e-48 194.9 165 57.0
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 1.2e-42 177.9 312 34.9
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.6e-40 170.2 162 60.5
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 6.9e-33 145.6 186 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2555 Anthoceros agrestis HOM05D006406 ORTHO05D007883 5.8e-32 142.5 114 56.1
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 1.9e-22 110.9 135 48.9
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 1.3e-12 78.2 162 37.7
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 1.4e-09 68.2 41 75.6
Cre09.g392700 Chlamydomonas reinhardtii HOM05D006406 ORTHO05D007883 1.8e-09 67.8 95 43.2
Aqoxy601s001 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 1.2e-08 65.1 34 82.4
SMO172G0225 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 6.5e-07 59.3 78 38.5


User provided reference genes

Program Settings