Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 1.1e-170 603.2 294 100.0
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.4e-143 513.1 294 83.3
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 2.6e-129 465.7 294 76.9
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 3.5e-129 465.3 294 77.2
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 1.3e-128 463.4 291 76.3
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 2.2e-128 462.6 294 75.9
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.2e-128 462.6 294 76.5
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 6.5e-128 461.1 289 77.5
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.2e-127 458.8 294 76.2
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.2e-126 456.8 294 75.9
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 6.1e-126 454.5 291 74.6
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 5.2e-125 451.4 291 75.3
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 6.7e-125 451.1 246 85.8
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 3.3e-124 448.7 291 72.9
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 2.2e-123 446.0 291 74.2
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 6.3e-123 444.5 294 71.8
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 5.3e-122 441.4 293 73.4
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.2e-121 440.3 293 72.7
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.7e-121 439.1 294 73.1
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 5.9e-121 438.0 277 75.8
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 1.2e-118 430.3 274 73.7
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 2.7e-118 429.1 291 73.9
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 6.1e-118 427.9 289 74.4
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 1.0e-117 427.2 291 72.5
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 5.2e-117 424.9 286 73.8
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 8.8e-117 424.1 285 73.0
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 2.8e-115 419.1 289 68.9
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 3.7e-115 418.7 291 71.8
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.1e-114 417.2 294 70.1
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 5.4e-114 414.8 294 70.1
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 5.4e-114 414.8 291 69.8
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 1.2e-113 413.7 294 67.7
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 2.7e-113 412.5 290 68.6
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 2.7e-113 412.5 290 69.3
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 3.5e-113 412.1 285 70.2
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 4.5e-113 411.8 294 68.0
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 7.7e-113 411.0 287 68.3
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.3e-112 410.2 293 67.9
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 2.2e-112 409.5 280 70.0
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 5.0e-112 408.3 286 68.5
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.1e-111 407.1 290 68.6
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.5e-111 406.8 289 68.5
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 1.5e-111 406.8 287 68.3
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 2.5e-111 406.0 290 68.3
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 3.2e-111 405.6 294 66.3
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.2e-111 405.2 290 66.9
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 4.2e-111 405.2 287 67.9
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 9.4e-111 404.1 251 75.3
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 2.7e-110 402.5 290 68.3
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 3.6e-110 402.1 282 70.2
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.7e-110 401.7 287 68.3
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.0e-109 400.6 315 62.9
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.0e-109 400.6 272 69.5
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 1.4e-109 400.2 287 67.6
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 4.0e-109 398.7 279 67.7
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 8.8e-109 397.5 280 67.9
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 2.0e-108 396.4 290 68.6
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 2.6e-108 396.0 282 67.4
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 3.4e-108 395.6 272 69.5
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 2.8e-107 392.5 257 72.8
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 2.8e-107 392.5 289 67.8
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 3.7e-107 392.1 258 71.7
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.9e-107 391.7 273 67.8
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.1e-106 390.6 300 63.7
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 4.1e-106 388.7 270 71.9
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 7.0e-106 387.9 273 67.4
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 1.2e-105 387.1 288 66.3
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 4.5e-105 385.2 289 65.7
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 4.5e-105 385.2 291 66.7
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 1.0e-104 384.0 282 65.6
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 1.3e-104 383.6 279 67.0
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.7e-104 383.3 251 73.7
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 2.3e-104 382.9 288 66.7
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 1.1e-103 380.6 289 65.4
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 1.1e-103 380.6 236 75.4
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.5e-103 380.2 286 65.7
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.6e-102 376.7 290 63.4
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 1.0e-101 374.0 286 65.0
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 1.8e-101 373.2 288 64.9
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.5e-100 370.2 290 61.0
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.4e-98 363.6 253 68.0
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 9.2e-98 360.9 287 62.0
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 8.6e-96 354.4 275 64.4
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.9e-95 353.2 294 59.9
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.6e-94 350.1 281 58.7
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 4.7e-94 348.6 280 59.3
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 6.2e-94 348.2 287 58.5
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 8.9e-93 344.4 273 59.3
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 3.4e-92 342.4 286 59.1
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 7.5e-92 341.3 274 60.9
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 7.5e-84 314.7 238 64.7
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 2.4e-82 309.7 290 54.8
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 5.4e-82 308.5 276 55.4
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.1e-81 306.6 293 54.6
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 2.7e-81 306.2 282 54.6
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.0e-80 304.3 282 55.0
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.0e-80 304.3 282 55.0
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 1.3e-80 303.9 282 55.3
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.5e-79 300.4 290 54.5
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.5e-79 300.4 273 59.3
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 3.3e-79 299.3 289 54.0
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 3.3e-79 299.3 262 58.0
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 7.3e-79 298.1 283 53.0
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.6e-78 297.0 283 53.4
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 3.6e-78 295.8 287 53.0
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 3.6e-78 295.8 293 47.8
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 8.1e-78 294.7 290 53.4
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-77 294.3 282 52.8
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 2.3e-77 293.1 283 52.7
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 5.2e-77 292.0 285 53.7
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 1.5e-76 290.4 293 54.3
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 6.4e-75 285.0 282 52.5
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.0e-72 277.7 273 50.2
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 6.6e-72 275.0 253 52.6
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 4.2e-66 255.8 257 47.5
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 6.2e-54 215.3 252 44.0
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 6.0e-49 198.7 201 49.8
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 7.9e-49 198.4 253 39.9
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.0e-48 198.0 240 43.8
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 5.6e-47 192.2 250 40.0
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 8.1e-46 188.3 229 42.8
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 7.4e-39 165.2 287 39.4
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 4.8e-38 162.5 198 46.0
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 8.2e-38 161.8 197 44.2
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-37 161.4 242 40.9
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-37 161.0 183 47.5
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 5.3e-37 159.1 178 46.6
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 9.0e-37 158.3 204 47.1
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 1.2e-36 157.9 197 43.1
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 2.0e-36 157.1 197 44.2
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 4.5e-36 156.0 198 46.0
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.3e-35 154.5 246 39.8
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.4e-34 151.0 208 44.7
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 1.1e-31 141.4 281 35.9
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.5e-31 140.2 146 47.3
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 9.7e-31 138.3 145 49.0
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 6.9e-29 132.1 159 45.3
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 1.0e-27 128.3 145 48.3
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 3.0e-24 116.7 198 38.9
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 3.0e-24 116.7 198 38.9
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 3.7e-22 109.8 184 37.0
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 1.1e-21 108.2 180 36.7
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 2.9e-19 100.1 73 60.3
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 5.5e-18 95.9 97 51.5
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 4.7e-17 92.8 62 64.5
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 4.7e-17 92.8 62 64.5
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.8e-16 90.9 147 42.2
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.7e-14 84.3 91 51.6


User provided reference genes

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