Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 7.6e-109 397.1 194 100.0
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 8.4e-108 393.7 194 99.0
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 1.5e-88 329.7 195 82.6
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.8e-86 322.8 195 80.5
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 4.2e-83 311.6 193 79.3
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 2.6e-80 302.4 192 77.6
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 3.3e-80 302.0 193 77.7
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 2.8e-79 298.9 191 75.9
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 3.7e-79 298.5 191 77.0
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 3.1e-78 295.4 187 75.9
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 3.1e-78 295.4 194 75.3
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 4.1e-78 295.0 187 76.5
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.2e-77 293.5 195 74.9
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 2.0e-77 292.7 191 76.4
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 3.5e-77 292.0 187 77.5
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 4.5e-77 291.6 193 74.6
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 4.5e-77 291.6 193 75.1
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 4.5e-77 291.6 190 74.7
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 4.5e-77 291.6 190 76.3
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 7.7e-77 290.8 192 73.4
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.0e-76 290.4 187 76.5
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 2.9e-76 288.9 191 75.4
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 6.5e-76 287.7 189 73.5
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 5.5e-75 284.6 187 74.9
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 9.4e-75 283.9 188 75.0
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 1.6e-74 283.1 186 72.6
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.1e-74 282.7 187 72.7
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 2.7e-74 282.3 186 74.7
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 2.7e-74 282.3 186 72.0
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 3.6e-74 282.0 187 73.8
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 6.1e-74 281.2 194 72.7
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 6.1e-74 281.2 187 74.3
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 8.0e-74 280.8 186 73.1
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.0e-73 280.4 192 72.4
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.0e-73 280.4 187 73.3
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.0e-73 280.4 192 71.4
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 1.0e-73 280.4 192 71.4
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.8e-73 279.6 191 69.6
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 1.8e-73 279.6 195 71.3
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 2.3e-73 279.3 192 72.9
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 3.0e-73 278.9 186 72.0
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 4.0e-73 278.5 191 72.3
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.1e-72 276.9 186 71.5
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.5e-72 276.6 192 70.8
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 2.0e-72 276.2 180 75.0
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 2.6e-72 275.8 191 72.3
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 2.6e-72 275.8 188 69.7
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 4.4e-72 275.0 188 72.3
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.7e-71 273.1 188 71.3
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 2.2e-71 272.7 193 69.9
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 2.8e-71 272.3 186 70.4
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 3.7e-71 271.9 177 76.3
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 3.7e-71 271.9 190 73.2
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 1.8e-70 269.6 194 69.6
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 2.4e-70 269.2 192 69.3
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 3.1e-70 268.9 195 69.2
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 9.1e-70 267.3 189 69.8
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 9.1e-70 267.3 191 70.2
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 2.0e-69 266.2 195 68.7
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 2.0e-69 266.2 191 68.6
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 2.7e-69 265.8 195 69.7
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 5.9e-69 264.6 194 67.0
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 7.7e-69 264.2 189 68.3
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 1.0e-68 263.8 186 71.5
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.3e-68 263.5 185 73.0
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 1.7e-68 263.1 195 68.2
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 1.7e-68 263.1 195 67.7
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 2.2e-68 262.7 193 68.9
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 2.9e-68 262.3 195 68.2
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 2.9e-68 262.3 195 68.2
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 2.9e-68 262.3 192 68.8
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 5.0e-68 261.5 176 74.4
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 6.5e-68 261.2 191 66.5
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 1.9e-67 259.6 185 69.2
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 2.5e-67 259.2 196 67.3
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 2.5e-67 259.2 196 65.8
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 2.5e-67 259.2 188 66.5
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 4.2e-67 258.5 164 75.6
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 1.6e-66 256.5 164 75.0
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.1e-66 256.1 194 64.9
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 2.1e-66 256.1 187 70.6
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 6.1e-66 254.6 192 64.6
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 2.5e-59 232.6 187 61.5
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.6e-58 229.9 172 66.3
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 1.6e-58 229.9 182 63.2
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 6.1e-58 228.0 185 62.2
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 2.3e-57 226.1 188 59.0
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 4.0e-57 225.3 188 61.7
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.3e-55 220.3 174 62.6
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 2.4e-54 216.1 147 71.4
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 2.5e-51 206.1 182 56.6
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 2.8e-50 202.6 193 57.5
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 4.0e-49 198.7 195 52.3
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 9.2e-46 187.6 190 53.7
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 2.0e-45 186.4 148 63.5
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 5.9e-45 184.9 94 95.7
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 2.6e-40 169.5 104 83.7
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 4.7e-34 148.7 115 60.0
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.1e-33 147.5 101 69.3
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 3.2e-30 136.0 77 84.4
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 2.8e-26 122.9 81 75.3
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 1.3e-23 114.0 94 59.6
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.1e-21 106.7 92 60.9
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 5.6e-19 98.6 159 43.4
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 4.7e-18 95.5 75 61.3
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 4.7e-18 95.5 75 61.3
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 6.9e-17 91.7 73 63.0
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 7.8e-13 78.2 175 32.6
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.9e-12 75.9 157 30.6
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 5.6e-11 72.0 187 29.4
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.3e-10 70.9 187 32.1
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.6e-10 70.5 189 30.2
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 2.8e-10 69.7 176 31.2
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.8e-10 69.7 169 30.2
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 3.6e-10 69.3 161 31.1
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 4.8e-10 68.9 171 32.2
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 8.1e-10 68.2 164 29.9
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.4e-09 67.4 167 28.7
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.8e-09 67.0 177 29.9
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 2.4e-09 66.6 174 29.3
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 3.1e-09 66.2 174 28.7
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 3.1e-09 66.2 174 29.3
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 3.1e-09 66.2 169 30.8
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 5.3e-09 65.5 169 31.4
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 9.0e-09 64.7 181 27.1
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 9.0e-09 64.7 181 27.1
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 9.0e-09 64.7 174 31.6
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.5e-08 63.9 178 29.2
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.0e-08 63.5 170 30.6
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 3.4e-08 62.8 169 29.6
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 3.4e-08 62.8 148 29.7
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 3.4e-08 62.8 175 26.9
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 4.5e-08 62.4 189 28.6
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 4.5e-08 62.4 144 28.5
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.5e-08 62.4 172 27.9
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 5.8e-08 62.0 171 28.7
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 5.8e-08 62.0 174 28.2
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 5.8e-08 62.0 81 39.5
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 5.8e-08 62.0 169 29.6
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 5.8e-08 62.0 186 27.4
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.6e-08 61.6 175 27.4
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 7.6e-08 61.6 173 27.7
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 7.6e-08 61.6 173 28.9
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 9.9e-08 61.2 169 30.2
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 9.9e-08 61.2 142 28.9
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 9.9e-08 61.2 173 27.7
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 9.9e-08 61.2 176 27.3
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 1.3e-07 60.8 171 28.7
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.3e-07 60.8 171 28.7
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.3e-07 60.8 174 28.2
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 1.7e-07 60.5 167 28.1
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.9e-07 59.7 181 26.5
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 2.9e-07 59.7 165 29.1
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 3.8e-07 59.3 176 27.3
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.8e-07 59.3 166 28.9
PRCOL_00006077 Prasinoderma coloniale HOM05D006499 ORTHO05D007874 3.8e-07 59.3 176 27.8
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 4.9e-07 58.9 183 27.9
Cre06.g305500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 4.9e-07 58.9 147 25.9
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 4.9e-07 58.9 167 26.9
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 6.4e-07 58.5 171 27.5
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 8.4e-07 58.2 163 27.6
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 8.4e-07 58.2 167 29.3
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 1.1e-06 57.8 183 25.7
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 1.4e-06 57.4 172 27.3
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.4e-06 57.4 168 29.8
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 1.4e-06 57.4 172 27.9
vmacro15630 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 1.4e-06 57.4 85 40.0
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 1.9e-06 57.0 172 27.9
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 1.9e-06 57.0 116 35.3
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.9e-06 57.0 172 27.9
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 2.4e-06 56.6 167 26.9
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.4e-06 56.6 172 26.2
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 3.2e-06 56.2 170 27.1
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 3.2e-06 56.2 169 28.4
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 3.2e-06 56.2 176 28.4
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 3.2e-06 56.2 180 27.2
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 3.2e-06 56.2 176 26.1
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 3.2e-06 56.2 176 26.7
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 4.2e-06 55.8 173 27.7
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 4.2e-06 55.8 49 51.0
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 4.2e-06 55.8 166 28.9
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 5.4e-06 55.5 169 27.8
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 7.1e-06 55.1 170 28.8
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 7.1e-06 55.1 172 27.9
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 9.3e-06 54.7 147 29.3


User provided reference genes

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