Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p016952 Quercus lobata HOM05D000506 ORTHO05D337368 3.5e-144 515.0 267 100.0
QL05p083196 Quercus lobata HOM05D000506 ORTHO05D000369 3.1e-12 76.6 61 68.9
Manes.16G045700 Manihot esculenta HOM05D000506 ORTHO05D000369 5.0e-10 69.3 62 54.8
CiPaw.01G209800 Carya illinoinensis HOM05D000506 ORTHO05D000369 5.5e-09 65.9 63 57.1
Nitab4.5_0002885g0010 Nicotiana tabacum HOM05D000506 ORTHO05D000369 5.5e-09 65.9 63 54.0
CiPaw.02G129800 Carya illinoinensis HOM05D000506 ORTHO05D000369 9.4e-09 65.1 63 58.7
Nitab4.5_0001691g0010 Nicotiana tabacum HOM05D000506 ORTHO05D000369 1.2e-08 64.7 63 52.4
Cc04_g00480 Coffea canephora HOM05D000506 ORTHO05D000369 1.6e-08 64.3 63 55.6
Potri.008G009600 Populus trichocarpa HOM05D000506 ORTHO05D000369 2.1e-08 63.9 63 57.1
Sabra08G0005600 Salix brachista HOM05D000506 ORTHO05D000369 2.1e-08 63.9 63 57.1
TWI18G1329 Tripterygium wilfordii HOM05D000506 ORTHO05D000369 2.7e-08 63.5 63 52.4
CSS0007240 Camellia sinensis var. sinensis HOM05D000506 ORTHO05D000369 3.6e-08 63.2 61 57.4
Dinv20363 Davidia involucrata HOM05D000506 ORTHO05D000369 3.6e-08 63.2 62 54.8
FvH4_6g37470 Fragaria vesca HOM05D000506 ORTHO05D000369 3.6e-08 63.2 63 54.0
FAN02G1359 Fragaria x ananassa HOM05D000506 ORTHO05D000369 3.6e-08 63.2 63 54.0
FAN09G4079 Fragaria x ananassa HOM05D000506 ORTHO05D000369 3.6e-08 63.2 63 54.0
FAN14G4772 Fragaria x ananassa HOM05D000506 ORTHO05D000369 3.6e-08 63.2 63 54.0
Hund22374 Selenicereus undatus HOM05D000506 ORTHO05D000369 3.6e-08 63.2 65 52.3
EL10Ac8g19459 Beta vulgaris HOM05D000506 ORTHO05D000369 4.7e-08 62.8 63 55.6
CsaV3_7G033870 Cucumis sativus L. HOM05D000506 ORTHO05D000369 6.1e-08 62.4 62 54.8
Duzib192G0238 Durio zibethinus HOM05D000506 ORTHO05D000369 6.1e-08 62.4 63 55.6
Gohir.A05G113500 Gossypium hirsutum HOM05D000506 ORTHO05D000369 6.1e-08 62.4 63 55.6
Sc10g0008540 Simmondsia chinensis HOM05D000506 ORTHO05D000369 6.1e-08 62.4 63 54.0
COL.COLO4_22863 Corchorus olitorius HOM05D000506 ORTHO05D000369 8.0e-08 62.0 62 54.8
Peaxi162Scf00038g02414 Petunia axillaris HOM05D000506 ORTHO05D000369 8.0e-08 62.0 62 51.6
Solyc03g123820.2 Solanum lycopersicum HOM05D000506 ORTHO05D000369 8.0e-08 62.0 63 54.0
Sopen03g041570 Solanum pennellii HOM05D000506 ORTHO05D000369 8.0e-08 62.0 63 54.0
PGSC0003DMG400009158 Solanum tuberosum HOM05D000506 ORTHO05D000369 8.0e-08 62.0 63 54.0
Cfa003446 Carpinus fangiana HOM05D000506 ORTHO05D000369 1.0e-07 61.6 62 54.8
Gorai.009G117900 Gossypium raimondii HOM05D000506 ORTHO05D000369 1.0e-07 61.6 63 54.0
QL02p059512 Quercus lobata HOM05D000004 ORTHO05D000002 1.0e-07 61.6 167 31.1
RcHm_v2.0_Chr2g0150311 Rosa chinensis HOM05D000506 ORTHO05D000369 1.0e-07 61.6 63 50.8
FAN05G2289 Fragaria x ananassa HOM05D000506 ORTHO05D000369 1.4e-07 61.2 63 52.4
Thecc.06G016600 Theobroma cacao HOM05D000506 ORTHO05D000369 1.4e-07 61.2 66 51.5
TWI12G1323 Tripterygium wilfordii HOM05D000506 ORTHO05D000369 1.8e-07 60.8 63 50.8
Ah.14g085750 Amaranthus hybridus HOM05D000506 ORTHO05D000369 2.3e-07 60.5 62 51.6
Haze_16159 Corylus avellana HOM05D000506 ORTHO05D000369 2.3e-07 60.5 62 54.8
Gohir.D05G113900 Gossypium hirsutum HOM05D000506 ORTHO05D000369 2.3e-07 60.5 63 54.0
MD17G1143800 Malus domestica HOM05D000506 ORTHO05D000369 2.3e-07 60.5 63 52.4
AUR62033039 Chenopodium quinoa HOM05D000506 ORTHO05D000369 3.0e-07 60.1 63 54.0
AUR62042005 Chenopodium quinoa HOM05D000506 ORTHO05D000369 3.0e-07 60.1 63 54.0
Hma1.2p1_0090F.1_g045610 Hydrangea macrophylla HOM05D000506 ORTHO05D000369 3.0e-07 60.1 139 33.1
MD09G1157800 Malus domestica HOM05D000506 ORTHO05D000369 3.0e-07 60.1 63 52.4
AT1G73050 Arabidopsis thaliana HOM05D000506 ORTHO05D000369 4.0e-07 59.7 61 55.7
Lsat_1_v5_gn_5_137541 Lactuca sativa HOM05D000506 ORTHO05D000369 4.0e-07 59.7 60 53.3
Lalb_Chr01g0011741 Lupinus albus HOM05D000506 ORTHO05D000369 4.0e-07 59.7 50 60.0
CARHR066020 Cardamine hirsuta HOM05D000506 ORTHO05D000369 5.2e-07 59.3 61 55.7
MELO3C024300.2 Cucumis melo HOM05D000506 ORTHO05D000369 5.2e-07 59.3 62 51.6
Lsat_1_v5_gn_4_89261 Lactuca sativa HOM05D000506 ORTHO05D000369 5.2e-07 59.3 62 50.0
PGR031G1489 Punica granatum HOM05D000506 ORTHO05D000369 5.2e-07 59.3 63 49.2
vmacro18703 Vaccinium macrocarpon HOM05D000506 ORTHO05D000369 5.2e-07 59.3 63 50.8
Atru.chr1.2772 Acer truncatum HOM05D000506 ORTHO05D000369 6.8e-07 58.9 63 52.4
AL2G32800 Arabidopsis lyrata HOM05D000506 ORTHO05D000369 6.8e-07 58.9 61 55.7
Actinidia21858 Actinidia chinensis HOM05D000506 ORTHO05D000369 8.8e-07 58.5 61 54.1
DCAR_022629 Daucus carota HOM05D000506 ORTHO05D000369 8.8e-07 58.5 60 51.7
Sp5g28010 Schrenkiella parvula HOM05D000506 ORTHO05D000369 8.8e-07 58.5 61 55.7
Cpa.g.sc375.4 Carica papaya HOM05D000506 ORTHO05D000369 1.2e-06 58.2 63 50.8
Aa31LG4G3340 Aethionema arabicum HOM05D000506 ORTHO05D000369 1.5e-06 57.8 61 54.1
Thhalv10018360m.g Eutrema salsugineum HOM05D000506 ORTHO05D000369 1.5e-06 57.8 61 54.1
Prupe.3G168200 Prunus persica HOM05D000506 ORTHO05D000369 1.5e-06 57.8 63 47.6
Rhsim08G0246700 Rhododendron simsii HOM05D000506 ORTHO05D000369 1.5e-06 57.8 63 49.2
SGA_v2.0_scaffold68G22819 Striga asiatica HOM05D000506 ORTHO05D000369 1.5e-06 57.8 101 36.6
Carub.0002s1981 Capsella rubella HOM05D000506 ORTHO05D000369 2.0e-06 57.4 61 54.1
A07p39060 Brassica napus HOM05D000506 ORTHO05D000369 3.4e-06 56.6 61 54.1
C06p47270 Brassica napus HOM05D000506 ORTHO05D000369 3.4e-06 56.6 62 53.2
BraA07t31456Z Brassica rapa HOM05D000506 ORTHO05D000369 3.4e-06 56.6 61 54.1
Oeu053402.1 Olea europaea HOM05D000506 ORTHO05D000369 3.4e-06 56.6 63 50.8
Sed0018052 Sechium edule HOM05D000506 ORTHO05D000369 3.4e-06 56.6 62 50.0
BolC6t39766H Brassica oleracea HOM05D000506 ORTHO05D000369 4.4e-06 56.2 62 53.2
Ciclev10025302m.g Citrus clementina HOM05D000506 ORTHO05D000369 4.4e-06 56.2 63 49.2
SalBow7G2296 Salvia bowleyana HOM05D000506 ORTHO05D000369 4.4e-06 56.2 62 48.4
TAR369G0066 Trochodendron aralioides HOM05D000506 ORTHO05D000369 4.4e-06 56.2 114 38.6
arahy.Tifrunner.gnm1.ann1.UB9II0 Arachis hypogaea HOM05D000506 ORTHO05D000369 7.5e-06 55.5 60 53.3
arahy.Tifrunner.gnm1.ann1.XZF9WK Arachis hypogaea HOM05D000506 ORTHO05D000369 7.5e-06 55.5 60 53.3
HanXRQChr15g0497371 Helianthus annuus HOM05D000506 ORTHO05D000369 7.5e-06 55.5 62 46.8
Phvul.010G162900 Phaseolus vulgaris HOM05D000506 ORTHO05D000369 7.5e-06 55.5 44 65.9
SGA_v2.0_scaffold4G02102 Striga asiatica HOM05D000506 ORTHO05D000369 7.5e-06 55.5 65 47.7
ClCG09G001450 Citrullus lanatus HOM05D000506 ORTHO05D000369 9.8e-06 55.1 48 60.4
Medtr4g005860 Medicago truncatula HOM05D000506 ORTHO05D000369 9.8e-06 55.1 48 56.2
Nn2g12631 Nelumbo nucifera HOM05D000506 ORTHO05D000369 9.8e-06 55.1 48 56.2
THA.LOC104812207 Tarenaya hassleriana HOM05D000506 ORTHO05D000369 9.8e-06 55.1 62 51.6


User provided reference genes

Program Settings