Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 5.0e-53 210.7 96 100.0
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 6.1e-35 150.6 67 100.0
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 6.1e-35 150.6 67 100.0
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 6.1e-35 150.6 67 100.0
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 8.3e-32 140.2 64 96.9
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 8.1e-19 97.1 66 60.6
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 2.3e-18 95.5 68 60.3
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 6.8e-18 94.0 64 59.4
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 2.0e-17 92.4 71 59.2
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 7.6e-17 90.5 67 56.7
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 9.9e-17 90.1 71 57.7
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 2.2e-16 89.0 69 59.4
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 2.2e-16 89.0 67 55.2
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 2.9e-16 88.6 65 55.4
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 2.9e-16 88.6 65 60.0
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 4.9e-16 87.8 72 52.8
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 4.9e-16 87.8 64 56.2
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 8.3e-16 87.0 64 62.5
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 8.3e-16 87.0 65 56.9
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 1.1e-15 86.7 64 57.8
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.9e-15 85.9 71 57.7
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 1.9e-15 85.9 59 59.3
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 1.9e-15 85.9 69 56.5
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 2.4e-15 85.5 71 60.6
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 2.4e-15 85.5 71 60.6
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 2.4e-15 85.5 71 60.6
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 2.4e-15 85.5 64 56.2
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 3.2e-15 85.1 61 60.7
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 3.2e-15 85.1 72 55.6
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 3.2e-15 85.1 70 52.9
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 4.1e-15 84.7 65 61.5
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 5.4e-15 84.3 59 59.3
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 5.4e-15 84.3 63 55.6
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 7.1e-15 84.0 64 60.9
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 9.2e-15 83.6 62 56.5
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 9.2e-15 83.6 61 60.7
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 1.2e-14 83.2 65 52.3
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 2.1e-14 82.4 65 58.5
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 2.7e-14 82.0 64 60.9
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 2.7e-14 82.0 64 60.9
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 2.7e-14 82.0 58 58.6
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 2.7e-14 82.0 63 57.1
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 2.7e-14 82.0 65 55.4
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 2.7e-14 82.0 64 59.4
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 4.6e-14 81.3 67 56.7
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 4.6e-14 81.3 65 52.3
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 7.8e-14 80.5 61 63.9
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.7e-13 79.3 62 53.2
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 1.7e-13 79.3 64 51.6
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 2.3e-13 79.0 61 57.4
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 3.0e-13 78.6 70 50.0
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 3.0e-13 78.6 61 54.1
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 5.1e-13 77.8 69 58.0
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 5.1e-13 77.8 58 53.4
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 6.6e-13 77.4 70 48.6
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 8.6e-13 77.0 73 52.1
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 1.1e-12 76.6 62 53.2
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 1.1e-12 76.6 54 59.3
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 1.5e-12 76.3 66 56.1
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 1.9e-12 75.9 70 51.4
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 2.5e-12 75.5 67 49.3
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 2.5e-12 75.5 67 49.3
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 4.3e-12 74.7 61 54.1
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 5.6e-12 74.3 58 53.4
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 7.3e-12 73.9 61 49.2
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 7.3e-12 73.9 54 53.7
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.6e-11 72.8 44 65.9
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.6e-11 72.8 44 65.9
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.6e-11 72.8 44 65.9
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 1.6e-11 72.8 70 54.3
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 6.2e-11 70.9 67 50.7
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 8.1e-11 70.5 61 54.1
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 1.1e-10 70.1 47 55.3
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 4.0e-10 68.2 66 50.0
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 5.2e-10 67.8 77 45.5
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 6.8e-10 67.4 69 53.6
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 1.2e-09 66.6 56 57.1
FvH4_2g16730 Fragaria vesca HOM05D007709 ORTHO05D009577 1.2e-09 66.6 64 50.0
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 2.0e-09 65.9 66 48.5
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 1.3e-08 63.2 44 56.8
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 4.9e-08 61.2 67 43.3
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 4.9e-08 61.2 67 43.3
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 6.4e-08 60.8 54 50.0
Phvul.008G133200 Phaseolus vulgaris HOM05D030083 ORTHO05D009577 2.1e-06 55.8 33 66.7
Phvul.008G133400 Phaseolus vulgaris HOM05D030083 ORTHO05D009577 2.1e-06 55.8 33 66.7
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 6.0e-06 54.3 65 41.5
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 6.0e-06 54.3 65 41.5
PSO675G5027 Papaver somniferum HOM05D007709 ORTHO05D009577 7.8e-06 53.9 40 65.0
SMO358G0048 Selaginella moellendorffii HOM05D007709 ORTHO05D009577 7.8e-06 53.9 60 41.7


User provided reference genes

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