Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 1.1e-35 152.9 85 100.0
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 1.1e-35 152.9 85 100.0
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 1.1e-35 152.9 85 100.0
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 1.2e-34 149.4 67 100.0
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 1.3e-31 139.4 64 96.9
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.2e-18 96.3 69 60.9
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 1.6e-18 95.9 66 60.6
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 1.0e-17 93.2 64 59.4
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 5.1e-17 90.9 68 57.4
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 5.1e-17 90.9 72 58.3
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 8.7e-17 90.1 68 58.8
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 1.1e-16 89.7 70 60.0
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 1.1e-16 89.7 68 55.9
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 1.5e-16 89.4 66 60.6
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 5.7e-16 87.4 65 55.4
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 7.4e-16 87.0 64 56.2
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 1.3e-15 86.3 64 62.5
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 1.3e-15 86.3 72 52.8
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 1.6e-15 85.9 65 56.9
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 1.6e-15 85.9 71 53.5
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 2.2e-15 85.5 72 54.2
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 3.7e-15 84.7 61 60.7
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 3.7e-15 84.7 64 56.2
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 3.7e-15 84.7 71 60.6
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 3.7e-15 84.7 69 56.5
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 4.8e-15 84.3 70 58.6
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 4.8e-15 84.3 71 60.6
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 4.8e-15 84.3 71 60.6
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 4.8e-15 84.3 71 60.6
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 8.2e-15 83.6 72 55.6
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 8.2e-15 83.6 59 59.3
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 8.2e-15 83.6 63 55.6
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.1e-14 83.2 64 60.9
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 1.1e-14 83.2 61 60.7
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.4e-14 82.8 62 56.5
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 1.4e-14 82.8 60 58.3
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 1.4e-14 82.8 57 59.6
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 2.4e-14 82.0 65 52.3
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 2.4e-14 82.0 71 56.3
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 2.4e-14 82.0 71 56.3
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 3.1e-14 81.6 65 58.5
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 4.1e-14 81.3 63 57.1
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 4.1e-14 81.3 64 59.4
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 5.3e-14 80.9 73 57.5
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 5.3e-14 80.9 65 55.4
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 6.9e-14 80.5 67 56.7
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 6.9e-14 80.5 65 52.3
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 1.5e-13 79.3 71 50.7
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 2.6e-13 78.6 62 53.2
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 2.6e-13 78.6 60 53.3
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 3.4e-13 78.2 61 57.4
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 3.4e-13 78.2 67 53.7
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 4.5e-13 77.8 75 52.0
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 4.5e-13 77.8 61 54.1
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 5.9e-13 77.4 63 54.0
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.0e-12 76.6 69 58.0
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-12 75.9 68 50.0
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-12 75.9 68 50.0
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 2.2e-12 75.5 66 56.1
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 2.2e-12 75.5 54 59.3
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 3.8e-12 74.7 70 51.4
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 6.5e-12 73.9 68 48.5
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 6.5e-12 73.9 61 54.1
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 6.5e-12 73.9 72 54.2
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 8.5e-12 73.6 58 53.4
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.1e-11 73.2 61 49.2
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 1.4e-11 72.8 54 53.7
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.9e-11 72.4 44 65.9
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.9e-11 72.4 44 65.9
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.9e-11 72.4 44 65.9
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.2e-10 69.7 61 54.1
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 1.2e-10 69.7 67 50.7
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 2.1e-10 68.9 68 50.0
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 2.1e-10 68.9 57 49.1
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 6.1e-10 67.4 57 57.9
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 6.1e-10 67.4 77 45.5
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.0e-09 66.6 68 48.5
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.4e-09 66.2 69 53.6
FvH4_2g16730 Fragaria vesca HOM05D007709 ORTHO05D009577 1.8e-09 65.9 64 50.0
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 1.5e-08 62.8 44 56.8
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 2.5e-08 62.0 68 44.1
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 2.5e-08 62.0 68 44.1
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 7.4e-08 60.5 54 50.0
Phvul.008G133200 Phaseolus vulgaris HOM05D030083 ORTHO05D009577 1.8e-06 55.8 33 66.7
Phvul.008G133400 Phaseolus vulgaris HOM05D030083 ORTHO05D009577 1.8e-06 55.8 33 66.7
PSO675G5027 Papaver somniferum HOM05D007709 ORTHO05D009577 6.9e-06 53.9 40 65.0


User provided reference genes

Program Settings