Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p013877 Quercus lobata HOM05D001340 ORTHO05D005342 6.0e-155 550.8 282 100.0
QL03p013832 Quercus lobata HOM05D001340 ORTHO05D005342 1.3e-96 357.1 231 84.4
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 1.7e-88 330.1 261 74.3
QL03p014779 Quercus lobata HOM05D001340 ORTHO05D005342 1.4e-79 300.4 210 80.5
QL03p008578 Quercus lobata HOM05D001340 ORTHO05D005342 2.2e-72 276.6 227 72.7
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 1.2e-62 244.2 259 58.7
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 4.6e-62 242.3 260 58.5
QL03p014812 Quercus lobata HOM05D001340 ORTHO05D025918 2.8e-51 206.5 178 70.8
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 4.7e-51 205.7 259 51.4
CSS0048085 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 2.2e-48 196.8 256 49.2
CSS0027854 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 3.7e-48 196.1 256 48.8
QL03p008601 Quercus lobata HOM05D001340 ORTHO05D005342 1.1e-47 194.5 170 67.1
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 2.4e-47 193.4 262 48.1
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 9.2e-47 191.4 256 48.4
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 1.2e-46 191.0 252 50.4
Actinidia35521 Actinidia chinensis HOM05D001340 ORTHO05D005342 1.2e-46 191.0 259 49.4
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 1.0e-45 188.0 259 50.6
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 1.3e-45 187.6 253 46.2
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 2.3e-45 186.8 254 49.2
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 2.5e-44 183.3 260 47.7
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 2.1e-43 180.3 260 49.2
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 2.1e-43 180.3 236 48.7
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 2.8e-43 179.9 264 44.3
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 3.6e-43 179.5 254 43.7
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 8.1e-43 178.3 290 43.4
CSS0029007 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.8e-42 177.2 156 62.2
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 2.4e-42 176.8 227 50.7
arahy.Tifrunner.gnm1.ann1.CI26SV Arachis hypogaea HOM05D001340 ORTHO05D005342 4.0e-42 176.0 257 42.8
CSS0048014 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 5.2e-42 175.6 156 62.2
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 5.2e-42 175.6 254 44.1
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 4.4e-41 172.6 261 43.3
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 4.4e-41 172.6 260 44.2
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 2.2e-40 170.2 233 49.8
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 2.9e-40 169.9 231 45.5
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 2.9e-40 169.9 263 43.7
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 6.4e-40 168.7 232 46.1
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.4e-39 167.5 233 49.4
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.4e-39 167.5 233 49.8
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 1.9e-39 167.2 262 43.1
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 2.4e-39 166.8 232 46.1
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 3.2e-39 166.4 241 46.5
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 3.2e-39 166.4 260 43.1
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 5.4e-39 165.6 234 48.7
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 7.1e-39 165.2 267 43.1
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 2.1e-38 163.7 209 46.4
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 2.7e-38 163.3 249 40.6
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 1.0e-37 161.4 160 54.4
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 1.0e-37 161.4 251 43.8
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 1.0e-37 161.4 237 41.8
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.3e-37 161.0 260 44.2
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 2.3e-37 160.2 243 43.2
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 3.9e-37 159.5 263 41.4
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 5.1e-37 159.1 204 49.0
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 6.6e-37 158.7 260 43.8
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 8.7e-37 158.3 210 46.2
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.9e-36 157.1 237 41.4
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 2.5e-36 156.8 239 42.3
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 2.5e-36 156.8 238 45.4
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 2.5e-36 156.8 241 46.9
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 2.5e-36 156.8 258 41.5
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 5.6e-36 155.6 255 43.1
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 5.6e-36 155.6 213 48.4
QL03p014849 Quercus lobata HOM05D001340 ORTHO05D005342 7.3e-36 155.2 144 63.9
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 9.6e-36 154.8 239 41.8
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 9.6e-36 154.8 231 42.4
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 9.6e-36 154.8 231 42.4
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 9.6e-36 154.8 241 44.8
MELO3C004179.2 Cucumis melo HOM05D001340 ORTHO05D005342 1.3e-35 154.5 263 40.7
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 2.1e-35 153.7 206 47.1
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 2.8e-35 153.3 273 38.5
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 3.6e-35 152.9 224 42.9
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 4.8e-35 152.5 222 43.2
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 4.8e-35 152.5 222 43.2
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 4.8e-35 152.5 222 43.2
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 8.1e-35 151.8 208 45.7
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 1.4e-34 151.0 227 45.4
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 1.4e-34 151.0 242 42.1
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 3.1e-34 149.8 158 50.0
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 3.1e-34 149.8 244 43.9
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 9.0e-34 148.3 255 39.6
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 1.2e-33 147.9 204 44.6
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 1.5e-33 147.5 158 48.7
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 5.8e-33 145.6 206 45.6
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 9.9e-33 144.8 172 48.8
Sabra05G0009600 Salix brachista HOM05D001340 ORTHO05D005342 1.3e-32 144.4 255 43.9
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 1.7e-32 144.1 249 39.4
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 3.8e-32 142.9 240 44.2
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 1.4e-31 141.0 174 46.0
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 2.4e-31 140.2 246 37.8
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 3.2e-31 139.8 246 37.8
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 5.4e-31 139.0 241 37.8
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 5.4e-31 139.0 222 40.5
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 5.4e-31 139.0 249 40.6
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 9.3e-31 138.3 258 39.9
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 1.2e-30 137.9 194 44.8
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 2.7e-30 136.7 243 41.2
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 4.6e-30 136.0 173 45.1
Prupe.3G076000 Prunus persica HOM05D001340 ORTHO05D005342 6.0e-30 135.6 176 48.3
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 7.9e-30 135.2 230 38.7
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 1.7e-29 134.0 244 41.0
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 3.0e-29 133.3 172 46.5
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 3.9e-29 132.9 233 40.8
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 5.1e-29 132.5 230 39.6
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.3e-28 129.4 162 46.3
Glyma.20G097300 Glycine max HOM05D001340 ORTHO05D005342 4.3e-28 129.4 229 41.0
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.6e-27 127.5 230 42.2
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 2.8e-27 126.7 177 48.6
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 3.1e-26 123.2 248 36.3
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 7.6e-25 118.6 175 48.0
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 7.6e-25 118.6 248 39.1
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 9.9e-25 118.2 127 52.8
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 8.4e-24 115.2 187 45.5
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 1.1e-23 114.8 253 36.8
SEGI_27730 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 3.5e-22 109.8 219 32.4
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.0e-21 108.2 161 44.1
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 1.1e-20 104.8 102 56.9
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 1.9e-20 104.0 199 39.2
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 9.6e-20 101.7 150 39.3
Sabra05G0010200 Salix brachista HOM05D001340 ORTHO05D005342 2.4e-18 97.1 231 36.8
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 3.1e-18 96.7 210 32.9
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 2.0e-17 94.0 148 48.6
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 3.4e-17 93.2 171 39.8
Gorai.009G392200 Gossypium raimondii HOM05D001340 ORTHO05D005342 3.4e-17 93.2 97 54.6
Gohir.D10G111266 Gossypium hirsutum HOM05D001340 ORTHO05D005342 7.6e-17 92.0 97 53.6
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 3.8e-16 89.7 247 33.6
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 7.1e-15 85.5 233 30.0
RcHm_v2.0_Chr3g0457161 Rosa chinensis HOM05D001340 ORTHO05D005342 6.0e-14 82.4 75 56.0
Nn1g02026 Nelumbo nucifera HOM05D001340 ORTHO05D005342 2.1e-11 73.9 98 52.0
RcHm_v2.0_Chr3g0457171 Rosa chinensis HOM05D001340 ORTHO05D005342 2.8e-11 73.6 82 56.1
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 6.3e-11 72.4 201 27.9
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 6.9e-10 68.9 133 31.6
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 3.8e-08 63.2 136 36.8
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 3.2e-07 60.1 130 30.0
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 7.2e-07 58.9 136 29.4


User provided reference genes

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