Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 1.1e-143 513.5 286 100.0
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 4.1e-119 431.8 254 92.1
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.2e-91 340.5 283 68.2
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 1.1e-90 337.4 248 70.6
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 3.1e-90 335.9 288 64.2
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 6.4e-88 328.2 249 69.5
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 7.1e-87 324.7 295 63.4
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 9.3e-87 324.3 253 66.8
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.6e-86 323.6 292 59.6
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.6e-86 323.6 292 59.6
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.7e-85 320.1 241 70.1
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 2.3e-85 319.7 267 64.0
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.5e-84 317.0 283 62.5
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 4.3e-84 315.5 204 76.5
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 1.3e-83 313.9 293 58.7
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 3.6e-83 312.4 283 61.5
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 4.8e-83 312.0 297 62.6
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 6.2e-83 311.6 298 62.8
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 1.8e-82 310.1 248 66.5
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 2.4e-82 309.7 299 58.2
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 5.3e-82 308.5 245 69.0
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 5.3e-82 308.5 270 59.6
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 2.6e-81 306.2 266 62.8
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 2.9e-80 302.8 225 68.4
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 3.8e-80 302.4 283 61.5
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 4.9e-80 302.0 251 65.3
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.4e-79 300.4 288 59.7
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 2.4e-79 299.7 305 57.0
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 8.7e-77 291.2 252 60.3
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.1e-76 290.8 235 66.4
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.9e-76 290.0 229 66.8
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 1.9e-76 290.0 242 64.0
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 3.3e-76 289.3 229 69.0
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 4.3e-76 288.9 252 61.9
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 5.6e-76 288.5 221 67.9
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 5.6e-76 288.5 283 59.7
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 5.6e-76 288.5 248 62.1
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 3.6e-75 285.8 283 55.5
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 4.8e-75 285.4 237 59.1
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 4.8e-75 285.4 247 61.9
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 4.8e-75 285.4 251 64.9
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 8.1e-75 284.6 221 65.6
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 8.1e-75 284.6 229 65.5
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.4e-74 283.9 251 61.8
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.4e-74 283.9 245 66.5
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 1.4e-74 283.9 276 61.6
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 3.1e-74 282.7 253 61.3
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 4.0e-74 282.3 249 62.7
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 9.0e-74 281.2 224 69.2
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.0e-73 280.0 241 65.1
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 2.0e-73 280.0 235 62.6
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 7.6e-73 278.1 253 64.8
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 7.6e-73 278.1 249 62.7
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 9.9e-73 277.7 277 56.0
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.7e-72 276.9 251 61.4
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 6.4e-72 275.0 235 65.1
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 6.4e-72 275.0 227 64.3
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 1.9e-71 273.5 249 57.0
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 5.5e-71 271.9 252 58.3
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 2.7e-70 269.6 227 63.0
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 4.6e-70 268.9 236 64.0
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 6.0e-70 268.5 231 63.6
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 1.8e-69 266.9 243 63.8
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 2.3e-69 266.5 220 60.9
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 2.3e-69 266.5 250 58.4
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 5.1e-69 265.4 249 57.4
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 8.7e-69 264.6 240 62.5
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 2.5e-68 263.1 208 67.3
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 2.5e-68 263.1 178 73.0
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 4.3e-68 262.3 208 69.7
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 7.4e-68 261.5 231 64.1
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 1.8e-66 256.9 187 72.2
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 3.1e-66 256.1 224 58.0
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 4.0e-66 255.8 250 57.2
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 9.0e-66 254.6 182 68.1
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.5e-65 253.8 242 60.3
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.5e-65 253.8 242 60.3
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 1.5e-65 253.8 240 63.3
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.0e-65 253.4 242 57.0
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 2.6e-65 253.1 251 55.8
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 4.5e-65 252.3 198 62.6
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 5.8e-65 251.9 245 60.8
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 7.6e-65 251.5 248 58.5
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 1.7e-64 250.4 267 54.7
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 2.2e-64 250.0 242 59.9
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.2e-64 250.0 242 59.9
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 8.4e-64 248.1 237 58.6
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 1.9e-63 246.9 255 51.0
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 3.2e-63 246.1 200 68.0
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 6.0e-62 241.9 250 56.8
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 7.9e-62 241.5 249 56.2
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.3e-61 240.7 249 55.4
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.3e-61 240.7 258 55.4
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.3e-61 240.7 258 55.4
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 2.3e-61 240.0 249 55.8
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.3e-61 240.0 202 65.8
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 2.3e-61 240.0 185 62.7
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 3.3e-60 236.1 249 54.6
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 7.4e-60 235.0 187 62.0
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 9.6e-60 234.6 223 56.1
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.7e-59 232.6 274 51.1
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 8.2e-59 231.5 274 51.5
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.1e-58 231.1 218 59.2
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 3.1e-58 229.6 228 56.6
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 6.9e-58 228.4 294 50.0
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 9.0e-58 228.0 249 53.8
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 9.0e-58 228.0 290 54.1
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 3.4e-57 226.1 191 58.1
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 1.0e-56 224.6 273 50.9
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 3.8e-56 222.6 250 53.6
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.4e-55 220.7 250 52.4
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 5.5e-55 218.8 293 50.2
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 7.2e-55 218.4 288 50.3
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 7.2e-55 218.4 288 50.3
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 9.3e-55 218.0 157 70.7
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 1.6e-54 217.2 182 59.3
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.3e-53 214.2 229 53.7
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.3e-53 214.2 229 53.7
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.3e-53 214.2 229 53.7
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.3e-53 213.4 229 53.7
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 3.0e-53 213.0 245 53.1
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 3.9e-53 212.6 263 50.2
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 6.7e-53 211.8 150 70.7
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 6.7e-53 211.8 177 55.9
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 8.7e-53 211.5 177 67.8
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.6e-51 207.2 222 55.9
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 4.1e-50 202.6 182 57.1
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 4.1e-50 202.6 185 57.3
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.0e-49 200.3 219 51.1
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.4e-49 199.5 219 51.1
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 4.5e-49 199.1 228 50.4
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.4e-47 194.1 185 56.2
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 6.7e-45 185.3 184 51.6
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 8.8e-45 184.9 216 49.1
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 5.7e-44 182.2 170 63.5
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.7e-43 180.6 228 45.2
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 6.3e-43 178.7 231 48.1
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-42 177.6 222 46.4
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.4e-42 177.6 222 46.4
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 2.4e-42 176.8 300 39.0
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 4.1e-42 176.0 218 51.4
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 1.2e-41 174.5 143 65.7
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 5.9e-41 172.2 190 46.8
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 5.9e-41 172.2 196 45.4
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.3e-40 171.0 190 46.3
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 3.8e-40 169.5 190 46.3
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 8.5e-40 168.3 193 48.7
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 4.7e-38 162.5 179 44.1
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 7.9e-38 161.8 224 44.2
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.0e-37 161.4 187 46.5
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 3.9e-37 159.5 184 43.5
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 5.2e-37 159.1 156 52.6
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 9.7e-36 154.8 213 45.5
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 8.2e-35 151.8 202 39.6
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 6.5e-32 142.1 132 59.1
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 5.5e-31 139.0 147 58.5
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 4.0e-29 132.9 181 40.9
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 3.7e-27 126.3 158 43.0
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 7.0e-26 122.1 158 41.8
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 3.5e-25 119.8 162 49.4
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 2.9e-24 116.7 190 37.9
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 5.0e-24 115.9 97 72.2
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 8.3e-19 98.6 78 65.4
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 1.4e-18 97.8 97 52.6
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 2.9e-16 90.1 159 36.5
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.1e-14 84.0 69 65.2
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 8.0e-14 82.0 63 61.9
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 1.0e-13 81.6 61 67.2
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 7.8e-09 65.5 41 70.7
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 9.5e-07 58.5 193 23.8


User provided reference genes

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