Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 7.9e-38 159.8 75 100.0
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 5.0e-32 140.6 73 91.8
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 3.9e-29 131.0 75 88.0
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 3.3e-20 101.3 73 64.4
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 9.7e-20 99.8 73 64.4
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 6.5e-16 87.0 68 63.2
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.2e-14 82.8 72 56.9
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.6e-14 82.4 71 60.6
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 8.0e-14 80.1 67 58.2
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.4e-13 79.3 72 55.6
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.4e-13 79.3 73 57.5
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.4e-13 79.3 68 54.4
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.4e-13 79.3 67 59.7
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 1.8e-13 79.0 72 55.6
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.3e-13 78.6 69 56.5
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.0e-13 78.2 72 61.1
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 4.0e-13 77.8 74 59.5
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.0e-13 77.8 74 59.5
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.0e-13 77.8 74 59.5
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 5.2e-13 77.4 69 56.5
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.2e-13 77.4 73 56.2
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 5.2e-13 77.4 64 60.9
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 8.8e-13 76.6 68 57.4
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 8.8e-13 76.6 69 56.5
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.8e-13 76.6 71 57.7
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.2e-12 76.3 72 52.8
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.5e-12 75.9 72 52.8
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.5e-12 75.9 64 59.4
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.0e-12 75.5 66 59.1
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 2.0e-12 75.5 61 62.3
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 2.0e-12 75.5 75 56.0
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 3.4e-12 74.7 69 50.7
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 4.4e-12 74.3 60 60.0
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 4.4e-12 74.3 72 58.3
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 4.4e-12 74.3 67 55.2
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 4.4e-12 74.3 69 56.5
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 5.7e-12 73.9 64 57.8
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.7e-12 73.9 72 58.3
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 9.7e-12 73.2 53 67.9
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 1.3e-11 72.8 72 51.4
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.3e-11 72.8 55 65.5
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 2.2e-11 72.0 55 60.0
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 2.2e-11 72.0 64 56.2
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.2e-11 72.0 69 52.2
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 2.2e-11 72.0 72 51.4
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 2.8e-11 71.6 55 61.8
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 2.8e-11 71.6 55 61.8
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 2.8e-11 71.6 55 61.8
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 2.8e-11 71.6 55 61.8
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 2.8e-11 71.6 55 61.8
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 2.8e-11 71.6 72 52.8
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.8e-11 71.6 60 61.7
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.8e-11 71.6 64 57.8
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 3.7e-11 71.2 49 67.3
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 4.8e-11 70.9 64 56.2
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 6.3e-11 70.5 53 64.2
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 6.3e-11 70.5 59 57.6
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 8.3e-11 70.1 59 61.0
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 8.3e-11 70.1 73 52.1
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 8.3e-11 70.1 69 52.2
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.1e-10 69.7 55 63.6
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.1e-10 69.7 67 52.2
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.1e-10 69.7 59 59.3
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.4e-10 69.3 57 59.6
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.4e-10 69.3 70 54.3
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 1.4e-10 69.3 65 58.5
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.8e-10 68.9 48 68.8
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 1.8e-10 68.9 65 53.8
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 2.4e-10 68.6 61 60.7
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 2.4e-10 68.6 61 60.7
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 2.4e-10 68.6 65 55.4
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 2.4e-10 68.6 42 73.8
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 2.4e-10 68.6 59 57.6
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 3.1e-10 68.2 52 61.5
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 4.1e-10 67.8 73 52.1
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 4.1e-10 67.8 53 64.2
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 9.1e-10 66.6 44 68.2
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 9.1e-10 66.6 73 50.7
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.2e-09 66.2 59 55.9
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.2e-09 66.2 47 66.0
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.6e-09 65.9 58 55.2
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.6e-09 65.9 71 50.7
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.7e-09 65.1 40 75.0
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 2.7e-09 65.1 53 58.5
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.7e-09 65.1 70 50.0
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 3.5e-09 64.7 55 58.2
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 3.5e-09 64.7 66 51.5
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 3.5e-09 64.7 61 57.4
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 4.5e-09 64.3 53 60.4
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 4.5e-09 64.3 53 60.4
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 4.5e-09 64.3 43 65.1
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 5.9e-09 63.9 58 55.2
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 5.9e-09 63.9 40 72.5
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 5.9e-09 63.9 41 70.7
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 5.9e-09 63.9 43 67.4
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 7.7e-09 63.5 48 60.4
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 7.7e-09 63.5 74 45.9
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.0e-08 63.2 71 46.5
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.7e-08 62.4 48 62.5
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.7e-08 62.4 54 57.4
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.7e-08 62.4 54 57.4
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.7e-08 62.4 54 57.4
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.7e-08 62.4 54 53.7
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 2.2e-08 62.0 64 50.0
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.2e-08 62.0 44 63.6
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.2e-08 62.0 54 57.4
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.9e-08 61.6 57 52.6
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.9e-08 61.6 57 54.4
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 2.9e-08 61.6 67 49.3
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 3.8e-08 61.2 41 65.9
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 5.0e-08 60.8 61 50.8
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 5.0e-08 60.8 54 55.6
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 5.0e-08 60.8 54 55.6
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.1e-07 59.7 44 61.4
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.1e-07 59.7 44 61.4
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.1e-07 59.7 41 68.3
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.1e-07 59.7 50 56.0
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.1e-07 59.7 54 55.6
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.1e-07 59.7 57 56.1
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.5e-07 59.3 42 64.3
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 1.5e-07 59.3 57 52.6
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.9e-07 58.9 48 58.3
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.9e-07 58.9 46 60.9
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.5e-07 58.5 61 50.8
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 9.4e-07 56.6 55 52.7
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-06 56.2 42 61.9
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 1.6e-06 55.8 45 60.0
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 1.6e-06 55.8 42 61.9
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 2.7e-06 55.1 37 67.6
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 2.7e-06 55.1 42 61.9
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.6e-06 54.7 37 67.6


User provided reference genes

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