Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 2.7e-61 238.4 117 100.0
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 2.7e-61 238.4 117 100.0
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 2.7e-61 238.4 117 100.0
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 1.4e-44 183.0 112 80.4
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.5e-43 179.5 111 80.2
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 4.5e-40 167.9 111 73.0
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 5.0e-39 164.5 111 70.3
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 5.0e-39 164.5 112 69.6
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 5.0e-39 164.5 111 71.2
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 6.6e-39 164.1 112 69.6
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 8.6e-39 163.7 112 70.5
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.5e-38 162.9 111 69.4
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.9e-38 162.5 111 68.5
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 1.9e-38 162.5 112 69.6
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 2.5e-38 162.2 111 70.3
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 3.3e-38 161.8 111 68.5
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 3.3e-38 161.8 112 69.6
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 4.2e-38 161.4 111 70.3
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 4.2e-38 161.4 112 71.4
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 5.5e-38 161.0 111 69.4
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 9.5e-38 160.2 111 72.1
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.2e-37 159.8 111 68.5
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.2e-37 159.8 112 67.0
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-37 159.8 111 72.1
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 1.2e-37 159.8 111 67.6
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 2.1e-37 159.1 112 67.9
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 2.1e-37 159.1 111 67.6
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 2.8e-37 158.7 111 67.6
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 2.8e-37 158.7 111 71.2
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 2.8e-37 158.7 111 66.7
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 2.8e-37 158.7 112 68.8
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.6e-37 158.3 111 70.3
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.6e-37 158.3 111 70.3
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.6e-37 158.3 111 70.3
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 3.6e-37 158.3 95 86.3
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.6e-37 158.3 112 68.8
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 3.6e-37 158.3 112 67.9
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.7e-37 157.9 111 70.3
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 4.7e-37 157.9 112 67.9
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 4.7e-37 157.9 110 68.2
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.7e-37 157.9 112 67.9
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 4.7e-37 157.9 112 67.9
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.1e-37 157.5 111 70.3
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 6.1e-37 157.5 112 65.2
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-36 156.8 111 69.4
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-36 156.8 111 69.4
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 2.3e-36 155.6 111 66.7
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 2.3e-36 155.6 112 66.1
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.3e-36 155.6 111 70.3
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 2.3e-36 155.6 112 67.9
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 3.0e-36 155.2 112 67.0
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 4.0e-36 154.8 112 67.0
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 4.0e-36 154.8 112 67.0
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 4.0e-36 154.8 111 66.7
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 5.2e-36 154.5 117 65.8
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 5.2e-36 154.5 112 66.1
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 6.8e-36 154.1 112 67.0
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 8.9e-36 153.7 112 64.3
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 8.9e-36 153.7 111 64.9
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 1.2e-35 153.3 112 66.1
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 2.0e-35 152.5 112 66.1
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.0e-35 152.5 112 66.1
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 3.4e-35 151.8 111 64.9
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 3.4e-35 151.8 111 64.9
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 4.4e-35 151.4 112 67.0
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 4.4e-35 151.4 111 63.1
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 5.7e-35 151.0 111 61.3
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 9.8e-35 150.2 112 63.4
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.3e-34 149.8 112 62.5
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 1.3e-34 149.8 111 64.9
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 1.3e-34 149.8 112 60.7
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.8e-34 148.7 104 69.2
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.7e-34 148.3 112 63.4
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 4.9e-34 147.9 112 63.4
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.4e-33 146.4 111 63.1
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.8e-33 146.0 112 64.3
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 2.4e-33 145.6 111 63.1
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 3.1e-33 145.2 111 61.3
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.6e-32 142.9 111 61.3
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 2.7e-32 142.1 112 59.8
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 3.5e-32 141.7 111 60.4
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 3.5e-32 141.7 122 56.6
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 5.0e-31 137.9 113 59.3
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.1e-30 136.7 113 59.3
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.1e-30 136.7 113 59.3
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.5e-30 136.3 111 55.9
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.9e-30 136.0 112 56.2
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 1.9e-30 136.0 113 56.6
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.5e-30 135.6 113 58.4
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 2.5e-30 135.6 113 59.3
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 2.5e-30 135.6 132 50.8
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 3.3e-30 135.2 112 54.5
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 3.3e-30 135.2 113 57.5
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 3.3e-30 135.2 113 57.5
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 4.3e-30 134.8 111 55.0
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 7.3e-30 134.0 137 51.8
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 1.6e-29 132.9 113 56.6
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 3.6e-29 131.7 113 54.9
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 6.1e-29 131.0 112 56.2
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 5.2e-28 127.9 113 54.9
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 5.2e-28 127.9 112 58.0
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 1.2e-27 126.7 112 50.9
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 5.8e-27 124.4 86 66.3
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 9.8e-27 123.6 105 56.2
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.7e-26 122.9 111 58.6
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 4.9e-26 121.3 96 64.6
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.9e-25 119.4 112 50.0
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.9e-25 119.4 112 50.0
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 9.2e-25 117.1 111 59.5
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-24 116.3 85 68.2
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-24 116.3 85 68.2
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.0e-24 115.9 86 64.0
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 6.6e-23 110.9 103 49.5
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 2.5e-22 109.0 88 59.1
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 4.3e-22 108.2 85 57.6
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 9.5e-22 107.1 113 46.9
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 8.0e-21 104.0 112 44.6
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 1.5e-19 99.8 70 64.3
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 2.9e-18 95.5 66 74.2
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.6e-16 89.7 70 65.7
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 3.1e-12 75.5 112 40.2
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.5e-11 73.2 84 38.1
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 4.4e-11 71.6 57 56.1
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 2.2e-10 69.3 107 37.4
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 1.6e-08 63.2 40 67.5
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 9.5e-06 53.9 40 52.5


User provided reference genes

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