Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 0.0e+00 1099.0 537 100.0
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 6.1e-257 890.6 539 80.3
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 3.5e-252 874.8 534 77.9
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 9.7e-247 856.7 533 76.4
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 9.7e-247 856.7 528 77.3
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.3e-246 856.3 530 76.4
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 2.8e-246 855.1 519 78.2
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 3.1e-245 851.7 548 75.2
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 5.9e-244 847.4 528 76.1
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 1.0e-243 846.7 532 74.6
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 1.7e-243 845.9 520 76.9
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 1.7e-243 845.9 519 77.5
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 6.5e-243 844.0 522 76.1
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 8.5e-243 843.6 520 76.2
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.1e-242 843.2 552 73.4
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 1.1e-242 843.2 518 75.7
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 1.5e-242 842.8 522 75.7
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 4.7e-241 837.8 520 74.4
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 4.7e-241 837.8 521 75.4
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 1.8e-240 835.9 527 74.6
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 4.0e-240 834.7 527 74.6
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 2.6e-239 832.0 530 73.2
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 1.7e-238 829.3 531 74.2
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 2.2e-238 828.9 529 73.0
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 4.8e-238 827.8 525 74.3
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 2.4e-237 825.5 530 72.3
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 3.1e-237 825.1 526 74.1
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 3.1e-237 825.1 520 74.8
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 7.0e-237 823.9 525 74.9
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 1.6e-236 822.8 520 74.2
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 1.6e-236 822.8 520 72.9
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 2.0e-236 822.4 526 72.2
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 2.7e-236 822.0 520 73.3
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 7.7e-236 820.5 518 74.3
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 1.7e-235 819.3 530 72.3
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 2.2e-235 818.9 520 73.1
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 2.5e-234 815.5 518 73.7
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 1.6e-233 812.8 530 72.6
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 2.7e-233 812.0 526 72.2
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 3.6e-233 811.6 529 73.3
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 8.0e-233 810.4 511 74.8
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 8.8e-232 807.0 527 72.3
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 2.6e-231 805.4 520 71.0
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 3.4e-231 805.1 519 72.4
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 5.7e-231 804.3 517 72.9
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 2.2e-230 802.4 518 72.4
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.2e-230 802.4 528 72.9
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 4.9e-230 801.2 528 71.4
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 1.2e-228 796.6 529 71.3
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 2.7e-228 795.4 526 71.3
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 5.9e-228 794.3 518 70.3
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 7.7e-228 793.9 499 74.5
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 1.7e-227 792.7 469 78.0
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 2.9e-227 792.0 518 70.3
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 2.9e-227 792.0 519 72.1
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 2.9e-227 792.0 516 72.3
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 6.6e-227 790.8 518 70.8
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 1.9e-226 789.3 518 69.7
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 4.2e-226 788.1 604 68.5
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 9.5e-226 786.9 578 65.7
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 2.8e-225 785.4 517 71.4
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 1.4e-224 783.1 524 69.7
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 5.2e-224 781.2 517 71.2
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 6.8e-224 780.8 524 69.3
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 3.4e-223 778.5 519 70.1
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 3.4e-223 778.5 519 70.1
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 9.8e-223 776.9 530 69.6
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 1.4e-221 773.1 506 70.6
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 4.1e-221 771.5 519 68.8
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 2.7e-220 768.8 519 68.8
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 7.8e-220 767.3 548 66.2
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 3.9e-219 765.0 473 74.0
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 4.7e-217 758.1 544 65.8
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 3.1e-216 755.4 514 70.6
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.4e-213 746.5 519 67.1
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 5.0e-211 738.0 524 68.7
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 1.2e-209 733.4 571 63.2
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 3.1e-208 728.8 526 68.3
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 5.2e-208 728.0 519 65.7
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 2.6e-207 725.7 523 66.3
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 3.7e-206 721.8 529 66.7
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.4e-205 719.9 398 83.7
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 6.0e-204 714.5 532 65.8
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.0e-203 713.8 694 53.6
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 3.9e-203 711.8 557 65.5
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 1.6e-201 706.4 391 81.8
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 2.9e-198 695.7 445 74.8
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 4.9e-198 694.9 527 62.6
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.4e-197 692.6 535 64.5
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 2.1e-196 689.5 440 72.3
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.6e-196 688.3 582 61.3
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 3.8e-190 668.7 521 60.1
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 7.8e-188 661.0 508 65.2
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 9.0e-184 647.5 511 64.2
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 4.9e-182 641.7 524 61.6
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 5.1e-179 631.7 366 80.1
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 1.1e-178 630.6 420 67.9
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 2.4e-168 596.3 498 61.0
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 2.3e-163 579.7 520 53.7
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 6.7e-163 578.2 333 80.2
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.3e-161 573.9 308 85.4
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 5.0e-158 562.0 531 52.7
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.0e-151 540.0 530 55.1
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 4.5e-151 538.9 508 53.7
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.9e-149 533.5 349 72.8
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 1.0e-139 501.1 283 80.9
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 3.9e-139 499.2 522 51.1
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.1e-136 489.2 256 85.9
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 2.2e-134 483.4 444 53.6
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.2e-133 479.6 363 66.4
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 3.3e-130 469.5 342 66.4
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 7.5e-130 468.4 555 43.4
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 1.5e-117 427.6 286 68.9
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 5.5e-117 425.6 230 84.3
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 4.0e-115 419.5 228 83.8
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 4.0e-115 419.5 228 83.8
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 1.5e-114 417.5 230 82.6
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 2.0e-82 310.8 166 83.1
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 4.4e-82 309.7 535 38.3
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 1.8e-75 287.7 530 35.5
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 6.4e-73 279.3 503 37.4
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 3.2e-72 276.9 169 77.5
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.6e-71 273.1 218 62.8
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 6.6e-70 269.2 218 62.4
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 8.7e-70 268.9 355 46.8
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 4.8e-68 263.1 560 32.7
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 2.4e-67 260.8 502 36.5
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 9.9e-66 255.4 244 57.0
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 3.1e-59 233.8 209 56.5
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 7.4e-53 212.6 262 44.7
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 1.4e-40 171.8 85 100.0
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 2.7e-39 167.5 168 56.5
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.1e-35 155.6 85 76.5
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 5.3e-35 153.3 339 33.0
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.2e-33 147.9 196 44.9
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 5.0e-33 146.7 117 62.4
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 3.3e-29 134.0 105 62.9
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 8.2e-28 129.4 99 61.6
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.4e-27 128.6 103 65.0
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 4.1e-27 127.1 120 50.8
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.9e-26 123.2 85 67.1
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.8e-20 104.4 269 30.9
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.2e-12 78.2 41 73.2
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.1e-11 75.9 96 44.8
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 7.0e-11 73.2 82 50.0
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 1.5e-08 65.5 50 60.0
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 6.1e-07 60.1 33 81.8
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 1.8e-06 58.5 116 37.9
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 6.8e-06 56.6 117 29.9


User provided reference genes

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