Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 7.9e-42 173.3 86 100.0
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 2.3e-41 171.8 85 100.0
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 3.8e-36 154.5 83 88.0
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 1.1e-35 152.9 81 90.1
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 8.0e-34 146.7 82 81.7
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.0e-33 146.4 83 81.9
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 5.2e-33 144.1 78 87.2
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.5e-32 142.5 80 83.8
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 2.6e-32 141.7 81 79.0
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 3.3e-32 141.4 81 80.2
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 5.7e-32 140.6 80 80.0
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 5.7e-32 140.6 80 82.5
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 7.4e-32 140.2 79 84.8
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 1.3e-31 139.4 80 81.2
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.2e-31 138.7 79 83.5
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 2.2e-31 138.7 80 81.2
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 2.8e-31 138.3 79 82.3
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 4.8e-31 137.5 78 82.1
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 4.8e-31 137.5 78 82.1
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 4.8e-31 137.5 80 81.2
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.8e-31 137.5 108 64.8
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 6.3e-31 137.1 80 78.8
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 6.3e-31 137.1 78 80.8
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 1.1e-30 136.3 78 80.8
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 1.1e-30 136.3 80 82.5
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 1.4e-30 136.0 78 82.1
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 1.4e-30 136.0 80 80.0
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 1.8e-30 135.6 78 78.2
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.8e-30 135.6 78 80.8
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 1.8e-30 135.6 79 81.0
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 1.8e-30 135.6 79 81.0
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 1.8e-30 135.6 78 80.8
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 2.4e-30 135.2 79 79.7
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 3.1e-30 134.8 78 80.8
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 4.1e-30 134.4 80 77.5
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 4.1e-30 134.4 82 79.3
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 4.1e-30 134.4 81 77.8
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 4.1e-30 134.4 79 81.0
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 4.1e-30 134.4 78 80.8
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 7.0e-30 133.7 79 81.0
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 9.1e-30 133.3 81 80.2
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 9.1e-30 133.3 80 77.5
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 1.2e-29 132.9 83 78.3
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.2e-29 132.9 78 82.1
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.6e-29 132.5 79 78.5
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.6e-29 132.5 79 78.5
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.0e-29 132.1 80 81.2
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 2.6e-29 131.7 82 72.0
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 2.6e-29 131.7 82 72.0
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.5e-29 131.3 77 80.5
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 3.5e-29 131.3 78 76.9
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 3.5e-29 131.3 78 80.8
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 4.5e-29 131.0 79 75.9
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 5.9e-29 130.6 83 73.5
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 7.7e-29 130.2 78 75.6
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 7.7e-29 130.2 78 75.6
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 7.7e-29 130.2 77 80.5
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 1.0e-28 129.8 77 79.2
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 1.0e-28 129.8 77 79.2
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 1.7e-28 129.0 79 73.4
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 1.7e-28 129.0 77 79.2
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 2.9e-28 128.3 79 78.5
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.9e-28 128.3 77 77.9
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.9e-28 128.3 77 77.9
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 3.8e-28 127.9 77 75.3
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 3.8e-28 127.9 78 79.5
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 5.0e-28 127.5 111 60.4
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 5.0e-28 127.5 78 79.5
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 6.5e-28 127.1 78 78.2
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 6.5e-28 127.1 82 69.5
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 1.1e-27 126.3 79 72.2
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.1e-27 126.3 79 74.7
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.9e-27 125.6 77 76.6
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 1.9e-27 125.6 77 72.7
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 1.9e-27 125.6 77 72.7
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 2.5e-27 125.2 81 70.4
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 2.5e-27 125.2 83 69.9
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 7.2e-27 123.6 77 72.7
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 7.2e-27 123.6 76 73.7
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 9.4e-27 123.2 80 76.2
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 1.2e-26 122.9 79 74.7
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 1.2e-26 122.9 77 74.0
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.6e-26 122.5 66 86.4
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 2.1e-26 122.1 79 72.2
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 2.1e-26 122.1 79 72.2
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 2.1e-26 122.1 83 67.5
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 2.7e-26 121.7 77 74.0
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 2.7e-26 121.7 77 74.0
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 3.6e-26 121.3 77 71.4
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 3.6e-26 121.3 79 70.9
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 6.1e-26 120.6 82 68.3
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.0e-25 119.8 77 74.0
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.0e-25 119.8 77 74.0
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 1.0e-25 119.8 77 74.0
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 1.0e-25 119.8 69 81.2
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 3.0e-25 118.2 82 68.3
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 3.0e-25 118.2 82 68.3
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 2.6e-24 115.2 77 68.8
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 4.4e-24 114.4 77 68.8
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 8.3e-23 110.2 74 70.3
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 1.4e-22 109.4 78 67.9
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 3.5e-21 104.8 79 64.6
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 3.5e-21 104.8 106 52.8
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 7.7e-21 103.6 59 83.1
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 7.7e-21 103.6 74 66.2
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 2.9e-20 101.7 76 59.2
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 3.8e-20 101.3 102 52.9
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 6.5e-20 100.5 78 62.8
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.6e-18 94.7 58 75.9
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 6.8e-17 90.5 52 80.8
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 8.8e-17 90.1 53 81.1
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 8.8e-17 90.1 52 80.8
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 2.0e-16 89.0 53 77.4
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 2.0e-13 79.0 73 49.3
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 1.9e-11 72.4 49 75.5
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 1.9e-11 72.4 63 55.6
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 3.3e-11 71.6 70 47.1
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 5.5e-11 70.9 81 49.4
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 3.6e-10 68.2 48 68.8
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 6.1e-10 67.4 68 48.5
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 9.8e-08 60.1 33 81.8
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 1.1e-06 56.6 61 44.3


User provided reference genes

Program Settings