Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p010963 Quercus lobata HOM05D006309 ORTHO05D007937 2.3e-50 201.8 96 100.0
Dinv24513 Davidia involucrata HOM05D006309 ORTHO05D007937 4.4e-49 197.6 94 100.0
Manes.09G181100 Manihot esculenta HOM05D006309 ORTHO05D007937 2.4e-47 191.8 94 94.7
Prupe.6G304700 Prunus persica HOM05D006309 ORTHO05D007937 4.1e-47 191.0 96 92.7
Duzib205G1677 Durio zibethinus HOM05D006309 ORTHO05D007937 5.4e-47 190.7 95 93.7
Cpa.g.sc48.50 Carica papaya HOM05D006309 ORTHO05D007937 9.1e-47 189.9 95 92.6
Haze_03988 Corylus avellana HOM05D006309 ORTHO05D007937 9.1e-47 189.9 95 93.7
CSS0019637 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 1.2e-46 189.5 93 95.7
CSS0033999 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 1.2e-46 189.5 93 95.7
Hma1.2p1_0759F.1_g213920 Hydrangea macrophylla HOM05D006309 ORTHO05D007937 1.2e-46 189.5 93 95.7
Ciclev10013195m.g Citrus clementina HOM05D006309 ORTHO05D007937 2.0e-46 188.7 95 91.6
MD12G1199900 Malus domestica HOM05D006309 ORTHO05D007937 2.0e-46 188.7 95 93.7
Nn7g36656 Nelumbo nucifera HOM05D006309 ORTHO05D007937 4.5e-46 187.6 95 90.5
vmacro16416 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 5.9e-46 187.2 93 93.5
Rhsim11G0105200 Rhododendron simsii HOM05D006309 ORTHO05D007937 7.7e-46 186.8 93 93.5
CiPaw.07G036200 Carya illinoinensis HOM05D006309 ORTHO05D007937 1.0e-45 186.4 93 93.5
Ah.06g190700 Amaranthus hybridus HOM05D006309 ORTHO05D007937 1.7e-45 185.7 93 92.5
CAN.G637.25 Capsicum annuum HOM05D006309 ORTHO05D007937 1.7e-45 185.7 94 91.5
Cc02_g35850 Coffea canephora HOM05D006309 ORTHO05D007937 1.7e-45 185.7 94 89.4
Oeu061901.1 Olea europaea HOM05D006309 ORTHO05D007937 1.7e-45 185.7 94 92.6
Solyc03g098120.3 Solanum lycopersicum HOM05D006309 ORTHO05D007937 2.3e-45 185.3 94 91.5
Sopen03g028820 Solanum pennellii HOM05D006309 ORTHO05D007937 2.3e-45 185.3 94 91.5
TAR636G2194 Trochodendron aralioides HOM05D006309 ORTHO05D007937 2.9e-45 184.9 96 88.5
Atru.chr12.1543 Acer truncatum HOM05D006309 ORTHO05D007937 3.8e-45 184.5 95 90.5
Rhsim11G0104500 Rhododendron simsii HOM05D006309 ORTHO05D007937 3.8e-45 184.5 93 90.3
Nitab4.5_0000936g0050 Nicotiana tabacum HOM05D006309 ORTHO05D007937 5.0e-45 184.1 94 89.4
Hund05518 Selenicereus undatus HOM05D006309 ORTHO05D007937 5.0e-45 184.1 93 92.5
ClCG02G014650 Citrullus lanatus HOM05D006309 ORTHO05D007937 6.6e-45 183.7 94 90.4
RcHm_v2.0_Chr3g0458531 Rosa chinensis HOM05D006309 ORTHO05D007937 6.6e-45 183.7 95 89.5
PGSC0003DMG400031051 Solanum tuberosum HOM05D006309 ORTHO05D007937 6.6e-45 183.7 94 90.4
Peaxi162Scf00171g00731 Petunia axillaris HOM05D006309 ORTHO05D007937 1.1e-44 183.0 94 88.3
Thecc.03G310900 Theobroma cacao HOM05D006309 ORTHO05D007937 1.1e-44 183.0 95 89.5
CiPaw.04G111200 Carya illinoinensis HOM05D006309 ORTHO05D007937 1.5e-44 182.6 93 92.5
Nitab4.5_0004454g0020 Nicotiana tabacum HOM05D006309 ORTHO05D007937 1.5e-44 182.6 94 88.3
FvH4_6g08490 Fragaria vesca HOM05D006309 ORTHO05D007937 1.9e-44 182.2 95 88.4
FAN02G0285 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.9e-44 182.2 95 88.4
FAN05G1622 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.9e-44 182.2 95 88.4
FAN09G1610 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.9e-44 182.2 95 88.4
FAN14G3239 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.9e-44 182.2 95 88.4
Gohir.D08G174300 Gossypium hirsutum HOM05D006309 ORTHO05D007937 1.9e-44 182.2 94 91.5
Gorai.004G182000 Gossypium raimondii HOM05D006309 ORTHO05D007937 1.9e-44 182.2 94 91.5
arahy.Tifrunner.gnm1.ann1.RC3JIS Arachis hypogaea HOM05D006309 ORTHO05D007937 3.3e-44 181.4 93 88.2
Psat6g155680 Pisum sativum HOM05D006309 ORTHO05D007937 3.3e-44 181.4 93 88.2
AUR62000475 Chenopodium quinoa HOM05D006309 ORTHO05D007937 4.2e-44 181.0 93 88.2
Ca_10200_v3 Cicer arietinum L. HOM05D006309 ORTHO05D007937 4.2e-44 181.0 93 87.1
Gohir.A08G153400 Gossypium hirsutum HOM05D006309 ORTHO05D007937 4.2e-44 181.0 94 91.5
PGR083G2709 Punica granatum HOM05D006309 ORTHO05D007937 4.2e-44 181.0 95 87.4
Sed0021183 Sechium edule HOM05D006309 ORTHO05D007937 4.2e-44 181.0 94 89.4
vmacro01669 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 4.2e-44 181.0 95 90.5
Migut.H01672 Erythranthe guttata HOM05D006309 ORTHO05D007937 5.5e-44 180.6 93 89.2
arahy.Tifrunner.gnm1.ann1.P9U7KY Arachis hypogaea HOM05D006309 ORTHO05D007937 7.2e-44 180.3 93 87.1
arahy.Tifrunner.gnm1.ann1.VGN228 Arachis hypogaea HOM05D006309 ORTHO05D007937 7.2e-44 180.3 93 87.1
CDE09G0003 Ceratophyllum demersum HOM05D006309 ORTHO05D007937 9.5e-44 179.9 94 86.2
VMungo0720G0633 Vigna mungo HOM05D006309 ORTHO05D007937 9.5e-44 179.9 93 89.2
AUR62017099 Chenopodium quinoa HOM05D006309 ORTHO05D007937 1.2e-43 179.5 96 86.5
GSVIVG01031328001 Vitis vinifera HOM05D006309 ORTHO05D007937 1.2e-43 179.5 93 89.2
Lalb_Chr02g0147551 Lupinus albus HOM05D006309 ORTHO05D007937 2.1e-43 178.7 94 84.0
Sc16g0009400 Simmondsia chinensis HOM05D006309 ORTHO05D007937 2.1e-43 178.7 94 86.2
Phvul.007G205000 Phaseolus vulgaris HOM05D006309 ORTHO05D007937 2.8e-43 178.3 93 88.2
Actinidia22855 Actinidia chinensis HOM05D006309 ORTHO05D007937 3.6e-43 177.9 93 89.2
EL10Ac4g09558 Beta vulgaris HOM05D006309 ORTHO05D007937 3.6e-43 177.9 95 89.5
Potri.005G002900 Populus trichocarpa HOM05D006309 ORTHO05D007937 4.7e-43 177.6 94 88.3
TWI36G0052 Tripterygium wilfordii HOM05D006309 ORTHO05D007937 4.7e-43 177.6 94 87.2
Lalb_Chr21g0310061 Lupinus albus HOM05D006309 ORTHO05D007937 6.1e-43 177.2 94 83.0
FvH4_2g19190 Fragaria vesca HOM05D006309 ORTHO05D007937 8.0e-43 176.8 95 86.3
FAN24G3038 Fragaria x ananassa HOM05D006309 ORTHO05D007937 8.0e-43 176.8 95 86.3
ECA233G1704 Erigeron canadensis HOM05D006309 ORTHO05D007937 1.0e-42 176.4 94 86.2
Medtr1g484930 Medicago truncatula HOM05D006309 ORTHO05D007937 1.0e-42 176.4 93 84.9
MELO3C004152.2 Cucumis melo HOM05D006309 ORTHO05D007937 1.8e-42 175.6 95 83.2
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 1.8e-42 175.6 94 86.2
Sc09g0002420 Simmondsia chinensis HOM05D006309 ORTHO05D007937 1.8e-42 175.6 94 84.0
Aqoxy2G02488 Aquilegia oxysepala HOM05D006309 ORTHO05D007937 3.0e-42 174.9 95 82.1
AL1G67090 Arabidopsis lyrata HOM05D006309 ORTHO05D007937 3.0e-42 174.9 93 86.0
Carub.0002s0712 Capsella rubella HOM05D006309 ORTHO05D007937 3.0e-42 174.9 93 86.0
CANSAT54G2801 Cannabis sativa HOM05D006309 ORTHO05D007937 4.0e-42 174.5 95 86.3
Os01g0250600 Oryza sativa ssp. japonica HOM05D006309 ORTHO05D007937 4.0e-42 174.5 94 84.0
CARHR288700 Cardamine hirsuta HOM05D006309 ORTHO05D007937 6.8e-42 173.7 93 84.9
Glyma.20G090800 Glycine max HOM05D006309 ORTHO05D007937 6.8e-42 173.7 93 84.9
Glyma.20G092200 Glycine max HOM05D006309 ORTHO05D007937 6.8e-42 173.7 93 84.9
SalBow5G3054 Salvia bowleyana HOM05D006309 ORTHO05D007937 6.8e-42 173.7 94 86.2
Lj5g0003279 Lotus japonicus HOM05D006309 ORTHO05D007937 1.2e-41 172.9 93 86.0
AT1G57540 Arabidopsis thaliana HOM05D006309 ORTHO05D007937 1.5e-41 172.6 93 83.9
FAN15G2822 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.5e-41 172.6 95 84.2
TPR.G2591 Trifolium pratense HOM05D006309 ORTHO05D007937 2.0e-41 172.2 93 81.7
ATR0796G010 Amborella trichopoda HOM05D006309 ORTHO05D007937 3.4e-41 171.4 94 85.1
BcaB07g31141 Brassica carinata HOM05D006309 ORTHO05D007937 3.4e-41 171.4 94 81.9
BcaC04g22081 Brassica carinata HOM05D006309 ORTHO05D007937 3.4e-41 171.4 94 81.9
C09p23680 Brassica napus HOM05D006309 ORTHO05D007937 3.4e-41 171.4 94 81.9
BraA09t37510Z Brassica rapa HOM05D006309 ORTHO05D007937 3.4e-41 171.4 94 81.9
Sp1g28800 Schrenkiella parvula HOM05D006309 ORTHO05D007937 3.4e-41 171.4 94 81.9
THA.LOC104820476 Tarenaya hassleriana HOM05D006309 ORTHO05D007937 3.4e-41 171.4 93 81.7
Sp2g05970 Schrenkiella parvula HOM05D006309 ORTHO05D007937 5.7e-41 170.6 94 80.9
A09p18900 Brassica napus HOM05D006309 ORTHO05D007937 7.5e-41 170.2 94 81.9
BolC9t55290H Brassica oleracea HOM05D006309 ORTHO05D007937 7.5e-41 170.2 94 80.9
DCAR_007528 Daucus carota HOM05D006309 ORTHO05D007937 9.8e-41 169.9 108 77.8
Aa31LG2G11310 Aethionema arabicum HOM05D006309 ORTHO05D007937 1.3e-40 169.5 94 81.9
Prupe.8G045300 Prunus persica HOM05D006309 ORTHO05D007937 1.3e-40 169.5 96 83.3
CsaV3_2G007320 Cucumis sativus L. HOM05D006309 ORTHO05D007937 1.7e-40 169.1 93 83.9
Thhalv10010969m.g Eutrema salsugineum HOM05D006309 ORTHO05D007937 2.2e-40 168.7 94 81.9
unitig_62.g23615 Utricularia gibba HOM05D006309 ORTHO05D007937 4.9e-40 167.5 93 83.9
arahy.Tifrunner.gnm1.ann1.01IKZ7 Arachis hypogaea HOM05D006309 ORTHO05D007937 4.1e-39 164.5 126 65.1
HanXRQChr08g0212181 Helianthus annuus HOM05D006309 ORTHO05D007937 4.1e-39 164.5 88 84.1
Cfa012394 Carpinus fangiana HOM05D006309 ORTHO05D007937 9.2e-39 163.3 84 90.5
Sabra13G0001700 Salix brachista HOM05D006309 ORTHO05D007937 1.2e-38 162.9 112 72.3
PSO210G0390 Papaver somniferum HOM05D006309 ORTHO05D007937 1.0e-37 159.8 95 76.8
PSO761G0726 Papaver somniferum HOM05D006309 ORTHO05D007937 1.0e-37 159.8 95 76.8
Lj4g0016187 Lotus japonicus HOM05D006309 ORTHO05D007937 1.7e-37 159.1 93 79.6
SalBow4G0401 Salvia bowleyana HOM05D006309 ORTHO05D007937 6.6e-37 157.1 117 68.4
SalBow4G1963 Salvia bowleyana HOM05D006309 ORTHO05D007937 6.6e-37 157.1 117 68.4
SalBow4G2407 Salvia bowleyana HOM05D006309 ORTHO05D007937 6.6e-37 157.1 117 68.4
Sabra05G0000300 Salix brachista HOM05D006309 ORTHO05D007937 2.5e-36 155.2 137 59.9
Sabra05G0014400 Salix brachista HOM05D006309 ORTHO05D007937 2.5e-36 155.2 137 59.9
EL10Ac4g07573 Beta vulgaris HOM05D006309 ORTHO05D007937 3.6e-35 151.4 93 80.6
MBI18_g10373_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 1.7e-32 142.5 94 77.7
Dinv30948 Davidia involucrata HOM05D006309 ORTHO05D007937 2.2e-32 142.1 70 95.7
Mapoly0075s0044 Marchantia polymorpha HOM05D006309 ORTHO05D007937 1.2e-22 109.8 94 52.1
Pp3c8_1240 Physcomitrium patens HOM05D006309 ORTHO05D007937 2.3e-21 105.5 93 52.7
HanXRQChr06g0180851 Helianthus annuus HOM05D006309 ORTHO05D007937 1.2e-19 99.8 50 88.0
HanXRQChr16g0506271 Helianthus annuus HOM05D006309 ORTHO05D007937 1.2e-19 99.8 50 88.0
COL.COLO4_16932 Corchorus olitorius HOM05D006309 ORTHO05D007937 5.2e-18 94.4 46 95.7
Zm00001eb239560 Zea mays HOM05D006309 ORTHO05D007937 6.8e-18 94.0 50 82.0
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 8.9e-18 93.6 49 85.7
MBI06_g06498_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 5.8e-17 90.9 51 82.4
Glyma.09G093300 Glycine max HOM05D006309 ORTHO05D000504 4.9e-16 87.8 59 64.4
BNapus_Darmor_BZH_scaffold_223p00020 Brassica napus HOM05D006309 ORTHO05D007937 3.1e-10 68.6 39 79.5
Potri.013G002301 Populus trichocarpa HOM05D006309 ORTHO05D007937 5.2e-10 67.8 41 78.0
TAR627G1128 Trochodendron aralioides HOM05D006309 ORTHO05D007937 1.4e-07 59.7 39 76.9


User provided reference genes

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