Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 1.4e-279 965.7 496 100.0
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 1.6e-275 952.2 496 98.6
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 2.6e-161 572.8 465 68.0
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 3.5e-158 562.4 461 67.0
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 6.2e-139 498.4 463 62.9
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 6.2e-131 471.9 458 57.9
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 1.3e-125 454.1 461 55.7
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 7.1e-119 431.8 461 53.1
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 2.5e-116 423.3 453 53.2
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 6.5e-112 408.7 461 51.8
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 4.2e-111 406.0 456 52.9
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 6.1e-110 402.1 455 51.0
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 9.7e-108 394.8 455 50.5
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 4.8e-107 392.5 457 49.0
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 3.4e-105 386.3 457 50.5
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 7.7e-105 385.2 455 49.9
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 1.0e-104 384.8 517 46.0
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 5.1e-101 372.5 462 49.8
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 8.8e-101 371.7 458 49.6
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 1.4e-98 364.4 455 48.1
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 2.4e-98 363.6 464 48.7
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 6.9e-98 362.1 461 48.2
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 2.1e-94 350.5 456 46.9
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 3.0e-93 346.7 464 47.2
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 6.7e-93 345.5 458 45.9
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 6.3e-91 339.0 468 46.8
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 8.2e-91 338.6 459 46.6
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.4e-90 337.8 463 46.9
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 1.4e-90 337.8 458 46.3
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 4.1e-90 336.3 457 46.2
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 7.7e-89 332.0 461 44.3
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 7.7e-89 332.0 458 44.1
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 2.9e-88 330.1 453 44.6
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 6.5e-88 328.9 459 45.3
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.1e-87 328.2 461 44.0
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 7.2e-87 325.5 457 45.1
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 1.6e-86 324.3 458 42.8
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 8.0e-86 322.0 453 45.5
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 2.0e-84 317.4 460 43.5
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.8e-83 312.8 457 44.2
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 6.3e-83 312.4 457 42.0
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 8.2e-83 312.0 458 42.8
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 7.0e-82 308.9 455 44.2
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 2.5e-79 300.4 461 43.2
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 2.7e-78 297.0 459 41.8
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 1.2e-76 291.6 454 40.7
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 2.0e-76 290.8 455 41.1
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 4.4e-76 289.7 456 41.9
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 1.3e-75 288.1 448 40.4
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-73 281.6 440 42.3
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 1.2e-73 281.6 458 40.8
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 4.5e-73 279.6 557 36.6
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 4.5e-73 279.6 456 42.1
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.9e-71 274.2 458 39.5
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 4.2e-71 273.1 456 39.3
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 1.2e-70 271.6 455 40.7
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 1.2e-70 271.6 454 40.7
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.6e-70 271.2 449 40.8
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 2.8e-70 270.4 453 41.5
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 3.6e-70 270.0 451 40.1
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.0e-69 268.5 460 38.5
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.8e-69 267.7 456 41.2
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 2.3e-69 267.3 453 40.0
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 3.0e-69 266.9 453 41.1
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 6.8e-69 265.8 455 39.1
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 6.8e-69 265.8 463 38.9
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 1.2e-68 265.0 461 41.0
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 5.7e-68 262.7 456 39.7
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.7e-67 261.2 456 38.6
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 1.8e-66 257.7 458 37.3
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 5.4e-66 256.1 453 38.9
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 7.0e-66 255.8 486 36.6
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 9.2e-66 255.4 243 54.3
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 2.7e-65 253.8 453 39.7
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 4.5e-65 253.1 453 38.4
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 4.5e-65 253.1 453 38.9
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 4.5e-65 253.1 453 38.4
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.3e-64 251.5 436 39.7
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.1e-63 248.4 452 38.7
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 7.3e-63 245.7 501 33.9
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 9.5e-63 245.4 453 37.3
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.6e-62 244.6 453 37.3
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 1.6e-62 244.6 421 36.6
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 8.0e-62 242.3 456 38.4
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 1.4e-61 241.5 458 39.1
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.4e-61 241.5 460 37.0
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.4e-61 241.5 460 37.0
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 2.3e-61 240.7 452 38.1
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 4.0e-61 240.0 460 37.2
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 4.9e-59 233.0 457 35.4
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.0e-58 229.2 456 37.1
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 2.0e-57 227.6 194 58.2
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.8e-57 225.7 443 37.0
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 8.6e-56 222.2 398 38.2
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.7e-54 216.5 410 38.3
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 8.0e-54 215.7 317 43.8
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 2.0e-52 211.1 201 57.2
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 5.8e-52 209.5 455 34.5
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 5.4e-50 203.0 193 55.4
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 7.8e-49 199.1 451 35.3
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 1.0e-48 198.7 186 59.1
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 2.5e-47 194.1 165 57.6
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 1.6e-41 174.9 152 60.5
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 3.6e-38 163.7 155 57.4
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 8.1e-38 162.5 406 28.8
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 1.3e-32 145.2 119 61.3
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 2.3e-32 144.4 354 33.1
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.1e-31 142.1 145 53.8
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 9.9e-28 129.0 77 81.8
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 5.4e-26 123.2 140 47.9
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 3.0e-24 117.5 104 56.7
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 6.6e-24 116.3 116 51.7
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 8.7e-24 115.9 120 51.7
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 5.6e-23 113.2 125 52.8
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 1.1e-21 109.0 140 42.1
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 2.0e-20 104.8 351 28.8
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.7e-19 101.7 136 40.4
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 5.4e-18 96.7 166 36.1
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.3e-16 92.0 79 49.4
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 1.9e-15 88.2 55 70.9
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.5e-12 78.6 55 67.3
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 1.6e-06 58.5 152 30.3
Haze_06347 Corylus avellana HOM05D007003 ORTHO05D008499 6.2e-06 56.6 42 66.7


User provided reference genes

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