Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p008601 Quercus lobata HOM05D001340 ORTHO05D005342 1.8e-90 335.9 170 100.0
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 1.7e-67 259.6 170 83.5
QL03p014779 Quercus lobata HOM05D001340 ORTHO05D005342 1.7e-67 259.6 170 83.5
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 3.8e-56 221.9 169 71.0
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 6.1e-54 214.5 166 71.1
Actinidia35521 Actinidia chinensis HOM05D001340 ORTHO05D005342 5.7e-52 208.0 168 63.1
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 1.3e-51 206.8 166 67.5
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 2.2e-51 206.1 165 65.5
CSS0027854 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 6.4e-51 204.5 165 63.6
CSS0029007 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 6.4e-51 204.5 165 64.2
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 6.4e-51 204.5 165 64.8
CSS0048085 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.8e-50 203.0 165 63.0
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 4.1e-50 201.8 166 65.1
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 4.1e-50 201.8 168 64.9
CSS0048014 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 9.2e-50 200.7 165 63.6
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 1.6e-49 199.9 168 60.1
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 5.9e-49 198.0 165 61.8
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 2.3e-48 196.1 167 64.1
QL03p013877 Quercus lobata HOM05D001340 ORTHO05D005342 6.6e-48 194.5 170 67.1
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 3.3e-47 192.2 168 60.1
arahy.Tifrunner.gnm1.ann1.CI26SV Arachis hypogaea HOM05D001340 ORTHO05D005342 4.3e-47 191.8 171 58.5
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 4.3e-47 191.8 166 59.6
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 4.3e-47 191.8 168 58.9
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 5.6e-47 191.4 168 60.7
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 5.6e-47 191.4 168 59.5
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 7.3e-47 191.0 165 62.4
QL03p008578 Quercus lobata HOM05D001340 ORTHO05D005342 1.6e-46 189.9 136 80.1
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 2.1e-46 189.5 157 64.3
MELO3C004179.2 Cucumis melo HOM05D001340 ORTHO05D005342 3.6e-46 188.7 168 60.1
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 3.6e-46 188.7 166 59.0
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 4.7e-46 188.3 166 59.6
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 4.7e-46 188.3 168 58.3
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 8.0e-46 187.6 166 59.0
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 1.0e-45 187.2 168 61.3
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 1.4e-45 186.8 168 58.3
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 1.8e-45 186.4 166 58.4
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.8e-45 186.4 168 60.7
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 3.1e-45 185.7 168 57.1
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 4.0e-45 185.3 168 58.9
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 4.0e-45 185.3 168 57.7
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 5.2e-45 184.9 186 54.8
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 6.8e-45 184.5 168 57.1
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 8.9e-45 184.1 168 58.3
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 1.5e-44 183.3 169 56.2
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 2.0e-44 183.0 168 56.5
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 3.4e-44 182.2 165 59.4
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 4.4e-44 181.8 169 58.0
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 5.8e-44 181.4 168 56.0
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 7.5e-44 181.0 168 56.5
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 7.5e-44 181.0 168 56.0
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 7.5e-44 181.0 168 56.0
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 7.5e-44 181.0 168 56.0
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 7.5e-44 181.0 168 56.0
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 7.5e-44 181.0 168 56.0
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 9.8e-44 180.6 169 59.2
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 9.8e-44 180.6 168 55.4
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.3e-43 180.3 168 58.9
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 1.7e-43 179.9 170 57.1
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 2.2e-43 179.5 168 55.4
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 2.2e-43 179.5 165 58.2
QL03p014849 Quercus lobata HOM05D001340 ORTHO05D005342 2.9e-43 179.1 166 63.9
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 6.4e-43 177.9 168 58.3
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 6.4e-43 177.9 165 56.4
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 8.3e-43 177.6 156 60.9
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 1.1e-42 177.2 168 54.8
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 1.1e-42 177.2 168 57.7
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 1.1e-42 177.2 168 56.5
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 2.4e-42 176.0 164 56.1
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 3.2e-42 175.6 184 53.8
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 7.0e-42 174.5 165 55.8
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 9.2e-42 174.1 168 54.2
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 9.2e-42 174.1 168 54.2
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 9.2e-42 174.1 168 54.2
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 9.2e-42 174.1 164 59.1
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 1.6e-41 173.3 165 54.5
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 1.6e-41 173.3 168 55.4
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 2.7e-41 172.6 168 54.8
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 2.7e-41 172.6 168 59.5
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 4.6e-41 171.8 168 52.4
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 6.0e-41 171.4 168 59.5
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 1.3e-40 170.2 167 52.1
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 1.7e-40 169.9 166 56.6
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.7e-40 169.9 168 58.9
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 6.6e-40 167.9 168 52.4
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 6.6e-40 167.9 165 57.0
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 1.1e-39 167.2 166 53.0
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 4.3e-39 165.2 167 55.7
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 5.6e-39 164.9 165 58.2
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 7.3e-39 164.5 165 52.7
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 7.3e-39 164.5 167 56.9
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 8.1e-38 161.0 166 51.2
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 1.1e-37 160.6 165 52.1
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 6.8e-37 157.9 164 53.7
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 1.2e-36 157.1 164 54.3
Prupe.3G076000 Prunus persica HOM05D001340 ORTHO05D005342 3.4e-36 155.6 165 53.9
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.8e-36 154.8 156 53.2
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 5.8e-36 154.8 168 50.6
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 9.8e-36 154.1 169 51.5
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 3.7e-35 152.1 169 50.9
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 1.4e-34 150.2 169 52.7
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 1.2e-33 147.1 169 53.3
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 1.6e-33 146.7 168 51.2
SEGI_27730 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 1.5e-31 140.2 165 43.6
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 3.3e-31 139.0 133 59.4
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 1.1e-29 134.0 165 47.3
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 1.1e-29 134.0 133 54.9
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 1.4e-29 133.7 164 42.7
Glyma.20G097300 Glycine max HOM05D001340 ORTHO05D005342 1.8e-29 133.3 136 52.9
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 5.2e-29 131.7 137 57.7
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 6.8e-29 131.3 132 59.1
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 8.9e-29 131.0 133 53.4
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 2.0e-28 129.8 122 59.0
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 4.4e-28 128.6 133 52.6
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 9.9e-28 127.5 160 43.8
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 9.9e-28 127.5 123 56.9
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 1.7e-27 126.7 165 43.6
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 1.7e-27 126.7 165 45.5
Sabra05G0009600 Salix brachista HOM05D001340 ORTHO05D005342 1.4e-26 123.6 165 47.9
Gorai.009G392200 Gossypium raimondii HOM05D001340 ORTHO05D005342 7.8e-25 117.9 118 55.9
Gohir.D10G111266 Gossypium hirsutum HOM05D001340 ORTHO05D005342 3.3e-23 112.5 118 53.4
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 1.8e-21 106.7 101 62.4
Sabra05G0010200 Salix brachista HOM05D001340 ORTHO05D005342 3.1e-21 105.9 168 44.0
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 1.1e-18 97.4 169 41.4
RcHm_v2.0_Chr3g0457171 Rosa chinensis HOM05D001340 ORTHO05D005342 6.0e-17 91.7 101 56.4
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 7.8e-17 91.3 164 31.7
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 3.9e-16 89.0 154 33.8
QL03p013832 Quercus lobata HOM05D001340 ORTHO05D005342 6.6e-16 88.2 84 65.5
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 8.7e-16 87.8 150 31.3
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 1.1e-15 87.4 164 31.1
QL03p014812 Quercus lobata HOM05D001340 ORTHO05D025918 1.5e-15 87.0 51 90.2
RcHm_v2.0_Chr3g0457161 Rosa chinensis HOM05D001340 ORTHO05D005342 8.1e-14 81.3 65 58.5
Nn1g02026 Nelumbo nucifera HOM05D001340 ORTHO05D005342 1.2e-12 77.4 51 82.4
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 2.6e-12 76.3 167 32.3
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 3.4e-12 75.9 148 33.8
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 2.9e-11 72.8 148 32.4
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 1.2e-09 67.4 162 31.5
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 1.6e-09 67.0 51 66.7
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 3.5e-09 65.9 49 71.4
Gorai.005G157900 Gossypium raimondii HOM05D001340 ORTHO05D005342 4.6e-09 65.5 101 42.6
Cre02.g084900 Chlamydomonas reinhardtii HOM05D001340 ORTHO05D005342 1.5e-07 60.5 151 25.8


User provided reference genes

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