Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 3.8e-199 698.0 350 100.0
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 8.5e-159 563.9 353 81.6
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 3.0e-156 555.4 352 81.8
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 2.4e-145 519.2 350 76.6
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 2.0e-144 516.2 354 76.6
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 2.0e-144 516.2 341 77.4
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 7.7e-144 514.2 356 77.0
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 1.0e-143 513.8 351 77.2
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 1.3e-143 513.5 355 75.8
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 8.5e-143 510.8 354 76.3
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 7.2e-142 507.7 345 74.5
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 7.2e-142 507.7 345 74.5
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 1.2e-141 506.9 342 76.6
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 2.7e-141 505.8 348 74.7
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 6.1e-141 504.6 351 75.8
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 9.8e-139 497.3 344 73.8
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 9.8e-139 497.3 352 73.0
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 2.2e-138 496.1 352 73.0
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 3.1e-137 492.3 352 73.3
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 3.1e-137 492.3 347 74.6
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.1e-137 491.9 352 73.3
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.1e-137 491.9 353 73.4
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 9.1e-137 490.7 350 73.7
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 2.0e-136 489.6 306 79.7
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 4.5e-136 488.4 352 73.0
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 2.9e-135 485.7 344 73.5
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.8e-135 485.3 359 71.9
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.0e-135 485.0 352 72.4
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.0e-135 485.0 359 71.9
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 5.0e-135 485.0 351 70.7
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 1.1e-134 483.8 345 73.6
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.9e-134 483.0 351 73.8
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 1.2e-133 480.3 357 73.1
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 2.8e-133 479.2 350 72.9
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 8.0e-133 477.6 337 72.7
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.0e-132 477.2 351 71.5
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 1.4e-132 476.9 352 72.2
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 1.8e-132 476.5 351 73.2
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 3.0e-132 475.7 350 72.0
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 3.0e-132 475.7 350 71.4
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 5.7e-131 471.5 337 73.0
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 7.5e-131 471.1 349 69.1
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.7e-130 468.8 372 68.5
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 4.9e-130 468.4 352 70.5
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.8e-129 466.5 348 69.5
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 4.1e-129 465.3 350 71.1
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 5.4e-129 464.9 352 69.3
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 2.7e-128 462.6 356 69.7
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 2.7e-128 462.6 349 70.5
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 3.5e-128 462.2 352 67.9
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 5.9e-128 461.5 334 70.4
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 5.9e-128 461.5 352 68.5
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 7.8e-128 461.1 352 69.9
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 1.0e-127 460.7 450 58.0
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 1.3e-127 460.3 268 82.5
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 2.3e-127 459.5 335 71.3
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 2.3e-127 459.5 335 71.3
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 6.6e-127 458.0 350 68.0
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 6.6e-127 458.0 353 68.3
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 5.6e-126 454.9 363 66.7
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 7.3e-126 454.5 348 68.1
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 7.3e-126 454.5 348 68.1
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 1.6e-125 453.4 331 71.0
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 3.6e-125 452.2 349 67.9
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 3.0e-124 449.1 337 68.8
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 1.2e-123 447.2 356 66.0
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 1.2e-123 447.2 356 66.9
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 1.5e-123 446.8 350 68.6
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 2.6e-123 446.0 301 73.8
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 2.6e-123 446.0 345 67.5
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 7.5e-123 444.5 388 63.1
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 3.7e-122 442.2 298 75.5
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 1.1e-121 440.7 339 69.9
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 1.9e-121 439.9 257 82.9
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 7.0e-121 438.0 348 64.4
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 7.0e-121 438.0 254 84.3
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 1.3e-119 433.7 317 71.9
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 1.3e-119 433.7 356 66.3
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 3.0e-119 432.6 300 73.7
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 2.5e-118 429.5 299 70.6
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 7.3e-118 427.9 352 66.2
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 1.2e-117 427.2 334 66.2
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 1.1e-116 424.1 342 63.5
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 1.8e-116 423.3 345 66.1
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 8.9e-116 421.0 330 66.7
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 1.2e-115 420.6 350 65.7
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 7.0e-113 411.4 298 70.5
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 2.7e-112 409.5 350 63.1
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 3.5e-112 409.1 305 71.8
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 7.8e-112 407.9 344 62.5
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 3.9e-111 405.6 228 84.6
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 3.3e-110 402.5 355 63.7
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 9.6e-94 347.8 348 54.3
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 8.1e-93 344.7 308 62.7
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 1.4e-92 344.0 338 57.7
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 2.2e-82 310.1 254 61.0
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 2.9e-82 309.7 291 54.0
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 1.0e-79 301.2 270 54.8
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 3.0e-79 299.7 164 87.2
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 8.7e-79 298.1 172 82.0
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 5.5e-73 278.9 186 72.6
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 2.7e-72 276.6 328 46.6
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.8e-69 266.5 143 88.1
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 3.5e-64 249.6 223 52.5
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 2.3e-55 220.3 126 84.1
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 2.3e-55 220.3 126 84.1
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 5.1e-55 219.2 132 82.6
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 2.8e-53 213.4 174 64.9
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 7.7e-51 205.3 132 76.5
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 1.7e-42 177.6 280 36.1
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 2.5e-41 173.7 159 61.6
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 1.5e-38 164.5 270 35.2
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 2.5e-33 147.1 107 72.9
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 6.1e-32 142.5 238 37.4
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 1.7e-26 124.4 201 43.3
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 1.2e-24 118.2 82 69.5
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 5.7e-22 109.4 54 92.6
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 9.8e-22 108.6 92 60.9
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 2.8e-16 90.5 55 72.7
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 8.9e-15 85.5 129 43.4
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 2.8e-13 80.5 129 41.9
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 3.2e-12 77.0 150 39.3
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 1.6e-11 74.7 38 86.8
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 3.3e-09 67.0 39 79.5
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 3.3e-09 67.0 39 79.5
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 2.1e-08 64.3 256 25.8
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 1.8e-07 61.2 254 26.0
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 1.8e-07 61.2 252 25.8
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 2.3e-07 60.8 252 25.8
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 2.3e-07 60.8 243 25.9
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 4.0e-07 60.1 252 25.8
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 4.0e-07 60.1 53 52.8
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 5.2e-07 59.7 254 26.0
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 6.8e-07 59.3 258 26.7
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 8.9e-07 58.9 252 25.4
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 8.9e-07 58.9 254 25.2
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 1.2e-06 58.5 254 24.8
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 1.5e-06 58.2 252 25.4
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 2.0e-06 57.8 254 25.6
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 4.4e-06 56.6 228 25.4
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 4.4e-06 56.6 230 27.4
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 9.8e-06 55.5 254 24.4


User provided reference genes

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